Gene omics information

Query gene ID	Os05g0477300
Gene name
Organism	Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.83	95.8	Os05g0477300	AK121584.1	-	Ribosomal protein S26E family protein	1e-16	At2g40590	40S ribosomal protein S26 (RPS26B)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.40	51.1	Os04g0346100	AK068012.1	-	40S ribosomal protein S27	2e-15	At3g61110	ARS27A (ARABIDOPSIS RIBOSOMAL PROTEIN S27)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.36	44.0	Os03g0296300	AK100042.1	-	Mitochondrial import inner membrane translocase,subunit Tim17/22 family protein	2e-1	At1g15360	SHN1 (SHINE 1)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.33	38.8	Os05g0194600	AK102487.1	-	Peptidase M22, O-sialoglycoprotein family protein	1e-5	At4g22720	glycoprotease M22 family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.22	19.4	Os07g0202900	AK065624.1	-	Conserved hypothetical protein	9e-7	At1g16870	mitochondrial 28S ribosomal protein S29-related	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.19	15.1	Os02g0591800	AK060611.1	-	Brix domain containing protein	1e-14	At3g15460	brix domain-containing protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
19.1	99.0	GSM275408	Bala root tip_At the wax layer_rep1	GSE10857	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
16.6	98.8	GSM275414	Azucena root tip_Before the wax layer_rep1	GSE10857	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
15.4	98.7	GSM275409	Bala root tip_At the wax layer_rep2	GSE10857	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
13.6	98.5	GSM275416	Azucena root tip_Before the wax layer_Rep3	GSE10857	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
13.1	98.4	GSM275410	Bala root tip_At the wax layer_rep3	GSE10857	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
12.3	98.3	GSM275407	Azucena root tip_At the wax layer_rep3	GSE10857	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
12.1	98.3	GSM275412	Azucena root tip Buckled at the wax layer_rep2	GSE10857	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
11.4	98.2	GSM275405	Azucena root tip_At the wax layer_rep1	GSE10857	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
11.0	98.2	GSM275406	Azucena root tip_At the wax layer_rep2	GSE10857	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
10.4	98.1	GSM275411	Azucena root tip_Buckled at the wax layer_rep1	GSE10857	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.32	1e-104	381	Os01g0823300	D38011.1	-	Ribosomal protein S26	2e-12	At2g40590	40S ribosomal protein S26 (RPS26B)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.10	2e-5	52	Os03g0816200	AK109021.1	-	Conserved hypothetical protein	5e-1	At2g40590	40S ribosomal protein S26 (RPS26B)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.02	2e-1	38	Os09g0242600	AK072475.1	-	Conserved hypothetical protein	1e-1	At4g16240	unknown protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.02	9e-1	36	Os11g0169400	AK110948.1	-	Zn-finger, C2H2 type domain containing protein	2e-1	At1g75710	zinc finger (C2H2 type) family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	9e-1	36	Os01g0366100	AK067903.1	-	Hypothetical protein	5e-1	At1g43860	transcription factor	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.15	1e-16	87	Arabidopsis thaliana	At2g40590	818654	40S ribosomal protein S26 (RPS26B)	F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic small ribosomal subunit, ribosome;MFOPA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.17	6e-35	149	Glycine max	Gma.15851.1.S1_at	CD408814	-	-	5e-37	At2g40510	40S ribosomal protein S26 (RPS26A)	C.G.	S.X.	Please select
0.30	2e-69	262	Hordeum vulgare	Contig1962_s_at	Contig1962	-	-	3e-20	At2g40590	40S ribosomal protein S26 (RPS26B)	C.G.	S.X.	Please select
0.15	1e-14	81	Populus trichocarpa	PtpAffx.11485.9.A1_at	CV272281	hypothetical protein	-	2e-8	At3g56340	40S ribosomal protein S26 (RPS26C)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.35	5e-81	301	Triticum aestivum	Ta.20842.1.S1_at	CA621555	-	-	8e-8	At2g40590	40S ribosomal protein S26 (RPS26B)	C.G.	S.X.	Please select
0.19	4e-39	161	Vitis vinifera	1621806_at	CF513282	hypothetical protein LOC100265511	-	1e-13	At2g40510	40S ribosomal protein S26 (RPS26A)	C.G.	S.X.	Please select
0.33	5e-116	416	Zea mays	Zm.6840.1.S1_at	CD447938	40S ribosomal protein S26	-	1e-10	At2g40590	40S ribosomal protein S26 (RPS26B)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name
L	GO:0006412	The cellular metabolic process by which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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