CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os05g0466600

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.59 78.0 Os05g0466600 AK119240.1 - - 7e-18 At5g59690 histone H4 S.X. H.G.
0.59 78.0 Os12g0541400 BQ907958 - Hypothetical protein 3e+0 At5g01300 phosphatidylethanolamine-binding family protein S.X. H.G.
0.59 78.0 Os06g0660700 AK058614.1 - Ubiquitin-conjugating enzyme E2S (EC 6.3.2.19)(Ubiquitin-conjugating enzyme E2-24 kDa)(Ubiquitin-protein ligase) (Ubiquitin carrier protein)(E2-EPF5) 1e-17 At5g05080 UBC22 (ubiquitin-conjugating enzyme 22) S.X. H.G.
0.58 77.0 Os03g0831200 AK073709.1 - Zn-finger, GATA type domain containing protein 1e-1 At5g28630 glycine-rich protein S.X. H.G.
0.47 62.3 Os02g0179300 AK069065.1 - RAD23 protein, isoform II 9e-10 At1g16190 DNA repair protein RAD23, putative S.X. H.G.
0.41 52.4 Os02g0100300 9630.m00003 - HSP associated protein like 2e-8 At4g22670 AtHip1 (Arabidopsis thaliana Hsp70-interacting protein 1) S.X. H.G.
0.40 51.1 Os07g0688800 AK068462.1 - Aldehyde dehydrogenase domain containing protein 4e-22 At3g66658 ALDH22a1 (Aldehyde Dehydrogenase 22a1) S.X. H.G.
0.40 51.1 Os11g0568500 AK059656.1 - Prefoldin beta-like family protein 7e-3 At3g22480 prefoldin-related KE2 family protein S.X. H.G.
0.32 36.3 Os03g0108800 AK065932.1 - Cell division control protein 2 homolog 1 (EC2.7.1.37) 8e-4 At3g48750 CDC2 (CELL DIVISION CONTROL 2) S.X. H.G.
0.32 36.3 Os01g0710000 AK111794.1 - - 8e-63 At2g19520 FVE S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
9.7 98.0 GSM409430 9311_young panicle 2cm, biological rep1 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
9.3 97.9 GSM409431 9311_young panicle 2cm, biological rep2 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
8.0 97.6 GSM409432 9311_young panicle 2cm, biological rep3 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
7.8 97.6 GSM409433 9311_young panicle 2cm, biological rep4 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
7.7 97.6 GSM409434 9311_young panicle 2cm, biological rep5 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
7.1 97.4 GSM409427 Nipponbare_young panicle 2cm, biological rep3 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
6.5 97.2 GSM409421 Nipponbare_young panicle 2cm, biological rep1 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
6.3 97.2 GSM409429 Nipponbare_young panicle 2cm, biological rep5 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
5.6 96.9 GSM409422 Nipponbare_young panicle 2cm, biological rep2 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
5.6 96.9 GSM67052 FL478 control replicate 1 GSE3053 Rice salt expression
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.82 0 706 Os05g0462700 AK105816.1 - Histone H4 variant TH011 6e-24 At5g59690 histone H4 C.G. S.X.
0.50 3e-142 506 Os09g0433600 AK058686.1 - Histone H4 2e-20 At1g07660 histone H4 C.G. S.X.
0.47 3e-148 525 Os10g0539500 AK119699.1 - Histone H4 6e-24 At5g59690 histone H4 C.G. S.X.
0.02 3e-3 44 Os02g0739700 AK111537.1 - Transcription factor E2F/dimerisation partner(TDP) family protein 3e+0 At4g19480 unknown protein C.G. S.X.
0.02 3e-3 44 Os06g0481400 9634.m02742 - - 6e-1 At5g14650 polygalacturonase, putative / pectinase, putative C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.38 7e-18 91 Arabidopsis thaliana At5g59690 836090 histone H4 F:DNA binding;P:nucleosome assembly;C:thylakoid;MOPFV - - - C.G. S.X.
0.48 3e-82 305 Glycine max PsAffx.C1000260_s_at PsAffx.C1000260 - - 9e-10 At5g59690 histone H4 C.G. S.X.
0.48 2e-146 517 Hordeum vulgare Contig197_at Contig197 - - 1e-24 At5g59690 histone H4 C.G. S.X.
0.35 9e-9 61 Populus trichocarpa PtpAffx.4633.2.S1_at CA823688 - - 9e-47 At1g07820 histone H4 C.G. S.X.
0.49 4e-152 537 Triticum aestivum TaAffx.132315.2.S1_x_at BE493709 - - 3e-22 At5g59690 histone H4 C.G. S.X.
0.38 8e-21 99 Vitis vinifera 1613076_at CB970842 - - 2e-42 At5g59690 histone H4 C.G. S.X.
0.44 5e-125 446 Zea mays Zm.6721.12.A1_s_at BG265991 Histone H4 - 6e-18 At1g07660 histone H4 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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