CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os05g0462700

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.39 48.3 Os05g0462700 AK105816.1 - Histone H4 variant TH011 6e-24 At5g59690 histone H4 S.X. H.G.
0.50 68.0 Os11g0661900 AK064062.1 - Hypothetical protein 8e-1 At5g57640 - S.X. H.G.
0.44 58.1 Os04g0419600 CR282432 - Histone H3 5e-21 At1g09200 histone H3 S.X. H.G.
0.44 58.1 Os12g0628400 AK061110.1 - Fatty acid hydroxylase domain containing protein 1e-8 At4g20870 FAH2 (FATTY ACID HYDROXYLASE 2) S.X. H.G.
0.44 58.1 Os01g0866200 CA754851 - Histone H3 3e-47 At1g09200 histone H3 S.X. H.G.
0.38 46.9 Os08g0106100 AK071868.1 - Hypothetical protein 4e-1 At3g45870 integral membrane family protein / nodulin MtN21-related S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
23.8 99.4 GSM409429 Nipponbare_young panicle 2cm, biological rep5 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
22.3 99.3 GSM409421 Nipponbare_young panicle 2cm, biological rep1 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
19.5 99.1 GSM409427 Nipponbare_young panicle 2cm, biological rep3 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
19.0 99.0 GSM409422 Nipponbare_young panicle 2cm, biological rep2 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
15.6 98.7 GSM409428 Nipponbare_young panicle 2cm, biological rep4 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
12.7 98.4 GSM99870 TCHW P13_agami control, biological rep1 GSE4438 Expression data from rice under salinity stress
12.6 98.4 GSM99858 TCHW P1_m103 control, biological rep1 GSE4438 Expression data from rice under salinity stress
12.2 98.3 GSM99859 TCHW P2_m103 control, biological rep2 GSE4438 Expression data from rice under salinity stress
11.5 98.2 GSM99862 TCHW P5_m103 salt stress, biological rep2 GSE4438 Expression data from rice under salinity stress
11.2 98.2 GSM99860 TCHW P3_m103 control, biological rep3 GSE4438 Expression data from rice under salinity stress
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.82 0 706 Os05g0466600 AK119240.1 - - 7e-18 At5g59690 histone H4 C.G. S.X.
0.56 2e-151 535 Os09g0433600 AK058686.1 - Histone H4 2e-20 At1g07660 histone H4 C.G. S.X.
0.53 6e-152 537 Os10g0539500 AK119699.1 - Histone H4 6e-24 At5g59690 histone H4 C.G. S.X.
0.02 2e-3 44 Os06g0481400 9634.m02742 - - 6e-1 At5g14650 polygalacturonase, putative / pectinase, putative C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.43 6e-24 111 Arabidopsis thaliana At5g59690 836090 histone H4 F:DNA binding;P:nucleosome assembly;C:thylakoid;MOPFV - - - C.G. S.X.
0.54 7e-86 317 Glycine max PsAffx.C1000260_s_at PsAffx.C1000260 - - 9e-10 At5g59690 histone H4 C.G. S.X.
0.54 9e-151 531 Hordeum vulgare Contig159_at Contig159 - - 8e-17 At5g59690 histone H4 C.G. S.X.
0.40 7e-9 61 Populus trichocarpa PtpAffx.4633.2.S1_at CA823688 - - 9e-47 At1g07820 histone H4 C.G. S.X.
0.55 4e-161 567 Triticum aestivum TaAffx.132315.2.S1_x_at BE493709 - - 3e-22 At5g59690 histone H4 C.G. S.X.
0.42 1e-22 105 Vitis vinifera 1613076_at CB970842 - - 2e-42 At5g59690 histone H4 C.G. S.X.
0.49 1e-131 468 Zea mays Zm.6721.12.A1_s_at BG265991 Histone H4 - 6e-18 At1g07660 histone H4 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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