Gene omics information

Query gene ID	Os05g0452800
Gene name
Organism	Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.82	95.0	Os05g0452800	AK102413.1	-	Zn-finger, RING domain containing protein	9e-7	At5g05830	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.42	53.9	Os01g0107700	AK070027.1	-	LIMONENE cyclase like protein	3e-1	At5g25820	exostosin family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.40	51.1	Os12g0239000	AK101424.1	-	Hypothetical protein	1e-14	At1g27850	unknown protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.36	44.0	Os03g0169000	AK107189.1	-	Hypothetical plant protein family protein	1e-9	At1g14020	unknown protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.27	27.5	Os04g0678300	AK102779.1	-	WD40-like domain containing protein	8e-24	At5g54200	WD-40 repeat family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.20	16.5	Os02g0123100	AK101344.1	-	Cell division control protein 2 homolog 2 (EC2.7.1.37)	1e-14	At3g48750	CDC2 (CELL DIVISION CONTROL 2)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.19	15.1	Os12g0565300	AK073968.1	-	Calmodulin-binding protein MPCBP	2e-14	At2g43040	NPG1 (no pollen germination 1)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.18	13.7	Os10g0170000	AK121907.1	-	Nucleotide-sensitive chloride conductanceregulator family protein	2e+0	At5g25890	IAA28 (INDOLE-3-ACETIC ACID INDUCIBLE 28)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.15	10.3	Os04g0501700	AK103837.1	-	Spc97/Spc98 family protein	2e-8	At5g17410	tubulin family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.14	9.3	Os08g0565700	AK067640.1	-	SRA-YDG domain containing protein	4e-6	At2g33290	SUVH2 (SU(VAR)3-9 HOMOLOG 2)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
16.8	98.8	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
9.7	98.0	GSM377082	Genomic DNA - 45 day old leaf sample - mutant g9799	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.3	97.9	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.3	97.9	GSM409431	9311_young panicle 2cm, biological rep2	GSE16265	SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
8.7	97.8	GSM159201	Inflorescence (P5, 15 - 22 cm), biological rep 1	GSE6893	Expression data for reproductive development in rice
8.4	97.7	GSM409427	Nipponbare_young panicle 2cm, biological rep3	GSE16265	SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
8.2	97.7	GSM409432	9311_young panicle 2cm, biological rep3	GSE16265	SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
8.1	97.7	GSM409430	9311_young panicle 2cm, biological rep1	GSE16265	SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
7.7	97.6	GSM409433	9311_young panicle 2cm, biological rep4	GSE16265	SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
7.6	97.5	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	3e-14	81	Os04g0581600	AK101692.1	-	The start codon is not identified.	3e-3	At3g29360	UDP-glucose 6-dehydrogenase, putative	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.03	4e-4	48	Os01g0917700	9629.m06846	-	PAK-box/P21-Rho-binding domain containing protein	7e-2	At1g70190	ribosomal protein L12 family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.02	3e-5	52	Os02g0714300	AK107036.1	-	AT-rich interaction region domain containingprotein	5e-15	At1g76510	ARID/BRIGHT DNA-binding domain-containing protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.02	4e-4	48	Os08g0510900	AK069250.1	-	Conserved hypothetical protein	2e-1	At1g17300	unknown protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.02	2e-3	46	Os10g0155400	9638.m00587	-	Amidase family protein	3e+0	At4g03540	integral membrane family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	4e-4	48	Os03g0770900	AK106660.1	-	Hypothetical protein	1e+0	At5g10310	unknown protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	9e-7	56	Arabidopsis thaliana	At5g05830	830468	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;PMO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.08	3e-10	67	Glycine max	Gma.13614.1.A1_at	CD402000	-	-	4e-1	At5g59000	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.04	4e-10	65	Hordeum vulgare	Contig20636_at	Contig20636	-	-	5e-6	At5g05830	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.03	2e-2	42	Populus trichocarpa	PtpAffx.46068.1.A1_a_at	CV242864	hypothetical protein	-	9e-21	At5g05830	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.10	7e-26	119	Triticum aestivum	Ta.7875.1.A1_at	BQ160837	-	-	3e-7	At5g05830	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.09	1e-6	54	Vitis vinifera	1618172_at	BQ796406	hypothetical protein LOC100252869	-	8e-5	At5g05830	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.26	5e-65	248	Zea mays	Zm.10716.1.S1_at	BQ539187	-	-	2e+0	At5g15750	RNA-binding S4 domain-containing protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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