CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os05g0437200

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.71 89.6 Os05g0437200 AK121867.1 - Protein of unknown function DUF502 family protein 4e-24 At1g43130 LCV2 (LIKE COV 2) S.X. H.G.
0.67 87.2 Os05g0419600 CR281258 - Conserved hypothetical protein 3e-3 At1g09645 unknown protein S.X. H.G.
0.60 79.7 Os01g0867900 AK061366.1 - - 2e-19 At1g43130 LCV2 (LIKE COV 2) S.X. H.G.
0.43 55.4 Os03g0275500 AK060774.1 - Epsin, N-terminal domain containing protein 1e-3 At2g25430 epsin N-terminal homology (ENTH) domain-containing protein S.X. H.G.
0.29 31.1 Os01g0556400 CB657305 - Heat shock protein DnaJ family protein 4e-3 At5g05750 DNAJ heat shock N-terminal domain-containing protein S.X. H.G.
0.19 15.1 Os02g0822400 AK062258.1 - No apical meristem (NAM) protein domain containingprotein 5e-3 At5g09330 anac082 (Arabidopsis NAC domain containing protein 82) S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.9 97.0 GSM278848 WuYun3-non-infected, biological rep2 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
5.5 96.8 GSM278844 WuYun3-RSV infected, biological rep1 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
5.3 96.7 GSM278854 KT95-418-non-infected, biological rep2 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
4.9 96.5 GSM278851 KT95-418-RSV infected,biological rep2 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
4.3 96.1 GSM278849 WuYun3-non-infected, biological rep3 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
4.3 96.1 GSM173091 Rice OsSRT1 RNAi transgenic line LM1 GSE7197 Down-regulation of OsSRT1 induces DNA fragmentation and cell death in rice
3.9 95.8 GSM278846 WuYun3-RSV infected, biological rep3 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
3.8 95.7 GSM278855 KT95-418-non-infected, biological rep3 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
3.5 95.3 GSM154946 Leaf_DMSO-treatment_30min_replicate 2 GSE6719 Cytokinin responsive genes in rice
3.1 94.8 GSM278847 WuYun3-non-infected, biological rep1 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.44 3e-162 573 Os01g0867900 AK061366.1 - - 2e-19 At1g43130 LCV2 (LIKE COV 2) C.G. S.X.
0.02 1e-3 46 Os02g0269000 AK071119.1 - Protein of unknown function DUF502 family protein 2e-44 At2g20130 LCV1 (LIKE COV 1) C.G. S.X.
0.02 2e-2 42 Os01g0781200 AK068412.1 - Rp1-like protein 2e+0 At3g60260 phagocytosis and cell motility protein ELMO1-related C.G. S.X.
0.02 2e-2 42 Os11g0603300 9639.m03552 - - 2e-1 At4g19270 unknown protein C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.29 4e-24 113 Arabidopsis thaliana At1g43130 840912 LCV2 (LIKE COV 2) F:molecular_function unknown;P:stem vascular tissue pattern formation;C:cellular_component unknown;OBPA - - - C.G. S.X.
0.18 5e-21 103 Glycine max Gma.9193.1.S1_at BE473615 - - 1e-22 At1g43130 LCV2 (LIKE COV 2) C.G. S.X.
0.44 5e-148 523 Hordeum vulgare Contig8408_at Contig8408 - - 5e-20 At1g43130 LCV2 (LIKE COV 2) C.G. S.X.
0.24 5e-18 93 Populus trichocarpa PtpAffx.63140.3.A1_s_at DN490693 hypothetical protein - 1e-28 At1g43130 LCV2 (LIKE COV 2) C.G. S.X.
0.44 1e-138 494 Triticum aestivum Ta.6305.1.S1_at BJ307537 - - 2e-19 At1g43130 LCV2 (LIKE COV 2) C.G. S.X.
0.24 6e-17 87 Vitis vinifera 1620440_at CF202640.1 - - 1e-31 At1g43130 LCV2 (LIKE COV 2) C.G. S.X.
0.40 2e-165 581 Zea mays Zm.2405.1.S1_at AI619081 hypothetical protein LOC100193368 - 2e-25 At1g43130 LCV2 (LIKE COV 2) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage