CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os05g0408200

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.53 71.3 Os05g0408200 AK100057.1 - Squamosa promoter binding protein-like 5(Fragment) 4e-10 At5g18830 SPL7 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 7) S.X. H.G.
0.73 91.1 Os03g0180300 AK068487.1 - Smr protein/MutS2 C-terminal domain containingprotein 1e+0 At4g16566 histidine triad family protein / HIT family protein S.X. H.G.
0.53 71.3 Os04g0431200 AK064823.1 - Cyclin-like F-box domain containing protein 4e-1 At5g25440 protein kinase family protein S.X. H.G.
0.38 46.9 Os05g0358000 AK070900.1 - Drought induced 19 family protein 2e+0 At3g27040 meprin and TRAF homology domain-containing protein / MATH domain-containing protein S.X. H.G.
0.36 44.0 Os12g0405100 AK111511.1 - Zinc finger protein 3 2e-5 At3g02830 ZFN1 (ZINC FINGER PROTEIN 1) S.X. H.G.
0.34 40.0 Os09g0323100 AK069027.1 - Zn-finger, RING domain containing protein 1e-3 At1g80400 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.33 38.8 Os01g0104100 AK072797.1 - The start codon is not identified. 1e-2 At3g54360 protein binding / zinc ion binding S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.5 96.3 GSM421694 XOO, 4 hai - rep4 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
4.3 96.1 GSM421674 XOC, 4 hai - rep4 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
3.6 95.5 GSM421686 XOC, 96 hai - rep4 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
3.6 95.5 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
3.3 95.1 GSM375773 slr1 (k1001)_ shoot_replicate 1 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
3.2 94.9 GSM421706 XOO, 96 hai - rep4 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
3.2 94.9 GSM421691 XOO, 4 hai - rep1 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
3.1 94.8 GSM421707 MOCK, 2 hai - rep1 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
3.1 94.8 GSM421699 XOO, 24 hai - rep1 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
3.1 94.8 GSM357133 14-day-old seedling, rep 2 GSE14275 Expression data for heat shock in rice seedlings
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 3e-3 46 Os08g0550000 AU174603 - Conserved hypothetical protein 6e-1 At2g17787 unknown protein C.G. S.X.
0.01 5e-5 52 Os02g0522700 9630.m03056 - Conserved hypothetical protein 2e-1 At5g51650 unknown protein C.G. S.X.
0.01 8e-4 48 Os03g0126800 NM_187581.1 - CBL-interacting protein kinase 9 1e-14 At5g21222 protein kinase family protein C.G. S.X.
0.01 8e-4 48 Os05g0481000 AK059369.1 - Serine/threonine protein phosphatase 2B catalyticsubunit, beta isoform (EC 3.1.3.16) (Calmodulin-dependentcalcineurin A subunit, beta isoform) (CAM-PRP catalyticsubunit). Splice isoform 2 1e-17 At1g32070 ATNSI (NUCLEAR SHUTTLE INTERACTING) C.G. S.X.
0.01 8e-4 48 Os10g0442700 AK066106.1 - - 5e-4 At5g03320 protein kinase, putative C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 4e-10 67 Arabidopsis thaliana At5g18830 832001 SPL7 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 7) Encodes a member of the Squamosa Binding Protein family of transcriptional regulators. SPL7 is expressed highly in roots and appears to play a role in copper homeostasis. Mutants are hypersensitive to copper deficient conditions and display a retarded growth phenotype. SPL7 binds to the promoter of the copper responsive miRNAs miR398b and miR389c. - - - C.G. S.X.
0.02 1e-1 40 Glycine max GmaAffx.44003.2.S1_at BM094470 - - 1e-13 At5g18830 SPL7 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 7) C.G. S.X.
0.09 4e-15 83 Hordeum vulgare Contig18321_at Contig18321 - - 3e-1 At4g07515 unknown protein C.G. S.X.
0.07 1e-7 59 Populus trichocarpa PtpAffx.208537.1.S1_at pmrna16941 hypothetical protein - 2e-24 At5g18830 SPL7 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 7) C.G. S.X.
0.03 7e-12 73 Triticum aestivum TaAffx.43841.1.S1_at BE492228 - - 8e-1 At4g07515 unknown protein C.G. S.X.
0.01 3e-2 40 Vitis vinifera 1614706_s_at CF605994 - - 4e-3 At5g43410 ethylene-responsive factor, putative C.G. S.X.
0.01 1e-2 42 Zea mays Zm.8232.1.A1_s_at CF623743 hypothetical protein LOC100191804 - 4e-1 At1g02405 proline-rich family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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