CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os05g0406800

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.77 93.1 Os05g0406800 AK062566.1 - Leucine-rich repeat, plant specific containingprotein 2e-2 At3g53235 unknown protein S.X. H.G.
0.67 87.2 Os01g0326000 AK061371.1 - Peroxidase 1 2e-1 At1g44970 peroxidase, putative S.X. H.G.
0.60 79.7 Os06g0478600 AK064086.1 - Leucine-rich repeat, plant specific containingprotein 9e-1 At5g01380 transcription factor S.X. H.G.
0.57 77.0 Os01g0957100 AK122121.1 - Protein kinase domain containing protein 2e+0 At3g45230 hydroxyproline-rich glycoprotein family protein S.X. H.G.
0.46 60.9 Os04g0517000 AK101663.1 - Conserved hypothetical protein 3e-2 At1g11700 unknown protein S.X. H.G.
0.17 12.6 Os06g0704500 AK105531.1 - Leucine-rich repeat, plant specific containingprotein 3e+0 At4g33970 protein binding / structural constituent of cell wall S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
10.2 98.0 GSM99858 TCHW P1_m103 control, biological rep1 GSE4438 Expression data from rice under salinity stress
9.5 97.9 GSM99860 TCHW P3_m103 control, biological rep3 GSE4438 Expression data from rice under salinity stress
8.9 97.8 GSM429984 Rice wild-type panicle rep2 GSE17194 Genome-wide gene expression profiling of rice Indica cultivar Zhongxian 3037 and mutant phoenix (pho) panicle
8.8 97.8 GSM429982 Rice wild-type panicle rep1 GSE17194 Genome-wide gene expression profiling of rice Indica cultivar Zhongxian 3037 and mutant phoenix (pho) panicle
8.4 97.7 GSM409432 9311_young panicle 2cm, biological rep3 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
8.4 97.7 GSM429983 Rice mutant phoenix (pho) panicle rep1 GSE17194 Genome-wide gene expression profiling of rice Indica cultivar Zhongxian 3037 and mutant phoenix (pho) panicle
7.8 97.6 GSM409422 Nipponbare_young panicle 2cm, biological rep2 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
7.6 97.5 GSM99864 TCHW P7_ir29 control, biological rep1 GSE4438 Expression data from rice under salinity stress
7.5 97.5 GSM99877 TCHW P19_ir29 control, biological rep1 GSE4438 Expression data from rice under salinity stress
7.3 97.5 GSM99882 TCHW P24_ir29 salt stress, biological rep3 GSE4438 Expression data from rice under salinity stress
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.08 6e-7 57 Os11g0644100 9639.m03912 - Leucine-rich repeat, plant specific containingprotein 6e-1 At1g20700 WOX14 (WUSCHEL RELATED HOMEOBOX 14) C.G. S.X.
0.03 1e-2 44 Os05g0104300 9633.m00044 - Leucine-rich repeat, plant specific containingprotein 2e+0 At5g50010 transcription factor/ transcription regulator C.G. S.X.
0.02 1e-2 44 Os01g0170300 9629.m00688 - Protein kinase domain containing protein 8e-6 At1g51870 protein kinase family protein C.G. S.X.
0.02 4e-2 42 Os01g0729400 NM_191870.1 - Leucine-rich repeat, typical subtype containingprotein 3e+0 At5g66320 zinc finger (GATA type) family protein C.G. S.X.
0.01 2e-3 46 Os07g0597200 AK120815.1 - Protein kinase domain containing protein 5e-1 At5g65830 leucine-rich repeat family protein C.G. S.X.
0.01 1e-2 44 Os03g0820300 AY286474.1 - ZPT2-14 7e+0 At5g14910 heavy-metal-associated domain-containing protein C.G. S.X.
0.01 1e-2 44 Os05g0169600 9633.m00690 - Protein kinase domain containing protein 4e-4 At4g04510 protein kinase family protein C.G. S.X.
0.01 1e-2 44 Os10g0561400 AK105558.1 - Myb, DNA-binding domain containing protein 6e-8 At5g56840 DNA-binding family protein C.G. S.X.
0.01 4e-2 42 Os11g0565000 9639.m03229 - Leucine-rich repeat, plant specific containingprotein 4e+0 At5g16920 - C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e-2 42 Arabidopsis thaliana At3g53235 824490 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown - - - C.G. S.X.
0.02 3e-2 42 Glycine max GmaAffx.65560.1.S1_at BG155046 - - 2e-1 At3g48209 - C.G. S.X.
0.01 9e-3 42 Hordeum vulgare Contig21212_at Contig21212 - - 5e+0 At1g70120 unknown protein C.G. S.X.
0.03 2e+0 36 Populus trichocarpa PtpAffx.88663.1.A1_at CV257263 - - 1e+0 At5g28491 unknown protein C.G. S.X.
0.01 8e-2 40 Triticum aestivum Ta.8450.3.S1_at CA698357 - - 4e+0 At2g40830 RHC1A C.G. S.X.
0.01 4e-1 36 Vitis vinifera 1619857_at CF568830 - - 7e-8 At2g23950 leucine-rich repeat family protein / protein kinase family protein C.G. S.X.
0.33 2e-117 422 Zea mays Zm.6381.1.A1_at CO534945 hypothetical protein LOC100273528 - 2e+0 At2g42610 LSH10 (LIGHT SENSITIVE HYPOCOTYLS 10) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage