CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os05g0404200

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.77 93.1 Os05g0404200 AK071730.1 - Methionine sulfoxide reductase B domain containingprotein 2e-18 At4g21860 MSRB2 (methionine sulfoxide reductase B 2) S.X. H.G.
0.70 88.4 Os05g0388500 AK065313.1 - 50S ribosomal protein L1 2e-26 At3g63490 ribosomal protein L1 family protein S.X. H.G.
0.69 87.9 Os05g0571400 AK062369.1 - Conserved hypothetical protein 4e-4 At1g64355 unknown protein S.X. H.G.
0.63 82.7 Os06g0146300 AK101052.1 - Conserved hypothetical protein 6e-2 At5g27560 unknown protein S.X. H.G.
0.63 82.7 Os01g0895100 AK067698.1 - Membrane-associated 30 kDa protein, chloroplastprecursor (M30) 4e-27 At1g65260 PTAC4 (PLASTID TRANSCRIPTIONALLY ACTIVE4) S.X. H.G.
0.59 78.0 Os02g0794400 AK065845.1 - Initiation factor 3 family protein 2e-1 At4g31150 endonuclease V family protein S.X. H.G.
0.58 77.0 Os08g0562100 AK105935.1 - Sorghum chloroplast CM3 malate dehydrogenase(NADP) (Fragment) 7e-20 At5g58330 malate dehydrogenase (NADP), chloroplast, putative S.X. H.G.
0.56 76.3 Os04g0431100 AK101973.1 - GrpE protein family protein 2e-1 At3g05290 PNC1 (PEROXISOMAL ADENINE NUCLEOTIDE CARRIER 1) S.X. H.G.
0.54 71.9 Os03g0331600 AK063782.1 - Conserved hypothetical protein 2e-12 At5g58250 unknown protein S.X. H.G.
0.53 71.3 Os01g0151200 AK110801.1 - Inner membrane protein ALBINO3, chloroplastprecursor. Splice isoform 2 1e-37 At2g28800 ALB3 (ALBINO 3) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
7.2 97.4 GSM207567 Mudanjiang8 wild type control rep3 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
6.9 97.3 GSM207559 Mudanjiang8 OsWRKY13 Overexpressing D11UM1-1 rep2 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
6.5 97.2 GSM207562 Mudanjiang8 OsWRKY13 Overexpressing D11UM7-2 rep1 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
6.4 97.2 GSM207563 Mudanjiang8 OsWRKY13 Overexpressing D11UM7-2 rep2 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
6.0 97.0 GSM207566 Mudanjiang8 wild type control rep2 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
6.0 97.0 GSM207565 Mudanjiang8 wild type control rep1 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
5.9 97.0 GSM207564 Mudanjiang8 OsWRKY13 Overexpressing D11UM7-2 rep3 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
5.9 97.0 GSM207558 Mudanjiang8 OsWRKY13 Overexpressing D11UM1-1 rep1 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
5.6 96.9 GSM207560 Mudanjiang8 OsWRKY13 Overexpressing D11UM1-1 rep3 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
5.2 96.7 GSM357137 14-day-old seedling, heat shock, rep 3 GSE14275 Expression data for heat shock in rice seedlings
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.24 1e-18 95 Os03g0360700 AK068764.1 - Protein-methionine-S-oxide reductase, PilB family 1e-22 At4g21860 MSRB2 (methionine sulfoxide reductase B 2) C.G. S.X.
0.02 6e-2 40 Os03g0565100 AK102421.1 - OST3/OST6 family protein 5e-5 At1g61790 OST3/OST6 family protein C.G. S.X.
0.02 6e-2 40 Os07g0627000 AU030760 - 4-alpha-glucanotransferase, chloroplast precursor(EC 2.4.1.25) (Amylomaltase) (Disproportionating enzyme)(D-enzyme) 2e-4 At5g64860 DPE1 (DISPROPORTIONATING ENZYME) C.G. S.X.
0.02 6e-2 40 Os09g0535500 AK108282.1 - Zn-finger, RING domain containing protein 7e+0 At4g35480 RHA3B C.G. S.X.
0.01 1e-2 42 Os03g0725800 AK120539.1 - Basic helix-loop-helix dimerisation region bHLHdomain containing protein 6e-2 At1g15840 unknown protein C.G. S.X.
0.01 6e-2 40 Os03g0762900 AK068645.1 - Protein of unknown function DUF566 family protein 3e-1 At4g29800 PLP8 (PATATIN-LIKE PROTEIN 8) C.G. S.X.
0.01 6e-2 40 Os07g0479300 D17587.1 - Serine carboxypeptidase-like (EC 3.4.16.-)(Fragment) 4e-6 At3g10410 scpl49 (serine carboxypeptidase-like 49) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.21 2e-18 93 Arabidopsis thaliana At4g21860 828274 MSRB2 (methionine sulfoxide reductase B 2) F:peptide-methionine-(S)-S-oxide reductase activity;P:biological_process unknown;C:chloroplast, chloroplast stroma;OBMPFAV - - - C.G. S.X.
0.14 2e-7 57 Glycine max Gma.4311.1.S1_at CD410181 - - 7e-3 At4g04830 methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein C.G. S.X.
0.40 9e-112 402 Hordeum vulgare Contig10417_at Contig10417 - - 2e-16 At4g21860 MSRB2 (methionine sulfoxide reductase B 2) C.G. S.X.
0.16 1e-5 52 Populus trichocarpa PtpAffx.17925.1.S1_at AJ767519 methionine sulfoxide reductase type - 8e-15 At4g21860 MSRB2 (methionine sulfoxide reductase B 2) C.G. S.X.
0.37 2e-102 373 Triticum aestivum Ta.22791.1.S1_at CD452557 - - 2e-13 At4g21860 MSRB2 (methionine sulfoxide reductase B 2) C.G. S.X.
0.27 3e-12 71 Vitis vinifera 1619200_at CB005350 hypothetical protein LOC100264443 - 3e-17 At4g21860 MSRB2 (methionine sulfoxide reductase B 2) C.G. S.X.
0.18 6e-5 48 Zea mays Zm.10690.1.S1_at AY104788.1 peptide methionine sulfoxide reductase msrB - 3e-5 At4g04830 methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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