Gene omics information

Query gene ID	Os05g0399400
Gene name
Organism	Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	87.2	Os05g0399400	L37289.1	-	Chitinase (EC 3.2.1.14)	4e-2	At3g12500	ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.44	58.1	Os11g0306400	AK106179.1	-	O-methyltransferase, family 2 domain containingprotein	2e-1	At3g16190	isochorismatase hydrolase family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.36	44.0	Os06g0302000	AK106070.1	-	Hypothetical protein	3e+0	At1g06475	unknown protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.21	17.9	Os09g0491100	AY056828.1	-	Beta-primeverosidase (EC 3.2.1.149)	9e-1	At3g60120	BGLU27 (BETA GLUCOSIDASE 27)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.19	15.1	Os11g0307300	9639.m01888	-	Herbicide safener binding protein	6e-1	At3g16190	isochorismatase hydrolase family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.11	6.5	Os04g0521100	9632.m04226	-	Plasma membrane intrinsic protein (Aquaporin)	1e-42	At2g37170	PIP2B (PLASMA MEMBRANE INTRINSIC PROTEIN 2)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.03	1.4	Os05g0226900	AF337054.1	-	Conserved hypothetical protein	3e-3	At2g43970	La domain-containing protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
88.5	100.0	GSM99862	TCHW P5_m103 salt stress, biological rep2	GSE4438	Expression data from rice under salinity stress
67.5	99.9	GSM262000	IAC165, 2 days after infection with S. hermonthica, biological replicate #1	GSE10373	Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
44.4	99.9	GSM99861	TCHW P4_m103 salt stress, biological rep1	GSE4438	Expression data from rice under salinity stress
33.2	99.8	GSM262005	IAC165, 4 days after infection with S. hermonthica, biological replicate #2	GSE10373	Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
27.9	99.6	GSM262003	IAC165, 4 days after mock-infection, biological replicate #2	GSE10373	Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
22.1	99.3	GSM262004	IAC165, 4 days after infection with S. hermonthica, biological replicate #1	GSE10373	Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
20.9	99.2	GSM99863	TCHW P6_m103 salt stress, biological rep3	GSE4438	Expression data from rice under salinity stress
18.0	98.9	GSM387556	Transgenic line 4, biological rep. 1	GSE15448	Glycinebetaine-induced water-stress tolerance in codA-expressing transgenic indica rice
14.7	98.6	GSM261998	IAC165, 2 days after mock-infection, biological replicate #1	GSE10373	Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
8.7	97.8	GSM99881	TCHW P23_ir29 salt stress, biological rep2	GSE4438	Expression data from rice under salinity stress

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.53	2e-76	287	Os06g0726100	Z29962.1	-	Endochitinase precursor (EC 3.2.1.14)	1e-4	At3g12500	ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.48	2e-54	214	Os06g0726200	AK061042.1	-	Endochitinase precursor (EC 3.2.1.14)	2e-4	At3g12500	ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.35	1e-31	139	Os05g0399700	AB012855.1	-	Chitinase (EC 3.2.1.14)	3e+0	At5g25940	early nodulin-related	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.26	3e-29	131	Os01g0287600	AK063062.1	-	Chitinase (Class II) (EC 3.2.1.14)	3e-2	At3g54420	ATEP3	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.18	3e-17	91	Os05g0138200	AK110261.1	-	Chitinase (Class II) (EC 3.2.1.14)	2e-3	At3g54420	ATEP3	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.16	4e-19	97	Os10g0542900	BM038035	-	Chitinase (EC 3.2.1.14) (Fragment)	3e-5	At3g12500	ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	4e-2	40	Arabidopsis thaliana	At3g12500	820429	ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)	encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.08	1e-6	56	Glycine max	GmaAffx.29692.2.S1_at	AI437572	-	-	8e-1	At1g24260	SEP3 (SEPALLATA3)	C.G.	S.X.	Please select
0.50	9e-48	190	Hordeum vulgare	Contig7001_at	Contig7001	-	-	2e-1	At1g02360	chitinase, putative	C.G.	S.X.	Please select
0.05	9e-1	36	Populus trichocarpa	PtpAffx.77318.2.S1_at	CX658035	hypothetical protein	-	5e-4	At3g12500	ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.49	2e-56	220	Triticum aestivum	Ta.2783.1.S1_at	AB029935.1	chitinase 2	-	2e-4	At3g12500	ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)	C.G.	S.X.	Please select
0.07	8e-4	44	Vitis vinifera	1608262_at	AF053341.1	class I extracellular chitinase	-	2e+0	At3g04180	germin-like protein, putative	C.G.	S.X.	Please select
0.41	2e-30	133	Zea mays	Zm.11654.1.A1_at	CK347373	hypothetical protein LOC100280135	-	1e-5	At3g54420	ATEP3	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name
C	GO:0051707	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from another living organism.
C	GO:0006032	The chemical reactions and pathways resulting in the breakdown of chitin, a linear polysaccharide consisting of P-1,4-linked N-acetyl-D-glucosamine residues.
C	GO:0016998	The chemical reactions and pathways resulting in the breakdown of macromolecules that form part of a cell wall.

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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