CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os05g0357800

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.83 95.8 Os05g0357800 AK060514.1 - Phospholipid/glycerol acyltransferase familyprotein 2e-4 At1g80950 phospholipid/glycerol acyltransferase family protein S.X. H.G.
0.67 87.2 Os01g0507500 AK102891.1 - Conserved hypothetical protein 2e-1 At1g71080 unknown protein S.X. H.G.
0.67 87.2 Os02g0293400 AK072985.1 - Ubiquitin ligase SINAT5 (EC 6.3.2.-) (Seven inabsentia homolog 5). Splice isoform 2 6e-45 At3g61790 seven in absentia (SINA) family protein S.X. H.G.
0.50 68.0 Os01g0813900 AK101729.1 - ZIGA1 protein (Fragment) 7e-6 At1g08680 ZIGA4 (ARF GAP-like zinc finger-containing protein ZiGA4) S.X. H.G.
0.20 16.5 Os11g0433200 AK067867.1 - Peptidase A22B, minor histocompatibility antigenH13 family protein 5e-3 At1g01650 aspartic-type endopeptidase/ peptidase S.X. H.G.
0.19 15.1 Os04g0568900 AK070267.1 - RES protein 2e-7 At1g12760 protein binding / ubiquitin-protein ligase/ zinc ion binding S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.2 96.0 GSM173091 Rice OsSRT1 RNAi transgenic line LM1 GSE7197 Down-regulation of OsSRT1 induces DNA fragmentation and cell death in rice
4.1 96.0 GSM304397 Control for the stable transgenic rice line (1) GSE12069 Mycroarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion
4.0 95.9 GSM149411 Rice Bala 0ppm Arsenate (Control) Rep3 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
3.8 95.7 GSM304395 Control for the stable transgenic rice line GSE12069 Mycroarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion
3.2 94.9 GSM302922 seedling_rep1 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
3.1 94.8 GSM149409 Rice Azucena 0ppm Arsenate (Control) Rep3 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
3.1 94.8 GSM304653 Mutant stable line GSE12069 Mycroarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion
3.0 94.6 GSM304390 Stable transgenic rice line GSE12069 Mycroarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion
2.9 94.5 GSM304654 Mutant stable line (1) GSE12069 Mycroarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion
2.8 94.3 GSM431929 Root- +Fe-P biological rep1 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
1.00 0 3414 Os08g0366100 AK120339.1 - EDF-1 protein (HMBF1alpha) (Endothelialdifferentiation-related factor 1, isoform alpha)(Fragment) 6e-11 At2g42680 MBF1A (MULTIPROTEIN BRIDGING FACTOR 1A) C.G. S.X.
0.24 0 674 Os08g0366200 AK103736.1 - Protein of unknown function DUF1313 family protein 1e-1 At3g08640 alphavirus core protein family C.G. S.X.
0.02 4e-7 57 Os01g0606100 NM_192692.1 - Conserved hypothetical protein 2e-1 At5g44450 methyltransferase C.G. S.X.
0.02 2e-6 56 Os04g0376500 AK103713.1 - Eukaryotic translation initiation factor 3 subunit3 (eIF-3 gamma) (eIF3 p38 subunit) (eIF3h) 6e-26 At1g10840 TIF3H1 C.G. S.X.
0.02 2e-6 56 Os05g0108000 AK065542.1 - The start codon is not identified. 4e-31 At5g14460 pseudouridine synthase/ transporter C.G. S.X.
0.02 3e-2 42 Os04g0387900 AK063212.1 - AT.I.24-6 protein (Fragment) 3e-5 At3g01940 unknown protein C.G. S.X.
0.01 4e-7 57 Os06g0682800 AK064816.1 - Zn-finger, C-x8-C-x5-C-x3-H type domain containingprotein 4e-1 At1g45688 unknown protein C.G. S.X.
0.01 2e-6 56 Os06g0198900 AK071363.1 - Protein kinase domain containing protein 5e+0 At5g05160 leucine-rich repeat transmembrane protein kinase, putative C.G. S.X.
0.01 4e-1 38 Os04g0175600 AK072016.1 - Caffeic acid O-methyltransferase (EC 2.1.1.6) 7e-1 At3g24020 disease resistance-responsive family protein C.G. S.X.
0.00 4e-1 38 Os03g0721200 AK065408.1 - ARM repeat fold domain containing protein 2e-49 At1g64790 binding C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e-4 48 Arabidopsis thaliana At1g80950 844435 phospholipid/glycerol acyltransferase family protein F:acyltransferase activity;P:metabolic process;C:endoplasmic reticulum, nucleus;BOMPF - - - C.G. S.X.
0.07 1e-6 56 Glycine max Gma.3921.2.S1_x_at BG790883 - - 1e-27 At1g80950 phospholipid/glycerol acyltransferase family protein C.G. S.X.
0.54 5e-170 597 Hordeum vulgare Contig10474_at Contig10474 - - 2e-16 At1g80950 phospholipid/glycerol acyltransferase family protein C.G. S.X.
0.13 3e-13 77 Populus trichocarpa PtpAffx.80921.2.A1_a_at CK096516 hypothetical protein - 2e-39 At1g80950 phospholipid/glycerol acyltransferase family protein C.G. S.X.
0.53 2e-177 623 Triticum aestivum Ta.19849.1.S1_at CD373669 - - 2e-10 At1g80950 phospholipid/glycerol acyltransferase family protein C.G. S.X.
0.10 2e-14 79 Vitis vinifera 1612437_a_at CF405889 hypothetical protein LOC100267860 - 1e-3 At1g80950 phospholipid/glycerol acyltransferase family protein C.G. S.X.
0.52 0 662 Zea mays Zm.274.2.S1_at CD988484 - - 6e-14 At1g80950 phospholipid/glycerol acyltransferase family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0008152 The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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