CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os05g0352700

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 87.2 Os05g0352700 CA759249 - Zn-finger, RING domain containing protein 7e+0 At5g14930 SAG101 (SENESCENCE-ASSOCIATED GENE 101) S.X. H.G.
0.43 55.4 Os12g0294100 AK111535.1 - WD40-like domain containing protein 1e-3 At2g47790 transducin family protein / WD-40 repeat family protein S.X. H.G.
0.42 53.9 Os07g0564000 BI805536 - Conserved hypothetical protein 9e-1 At4g02370 unknown protein S.X. H.G.
0.40 51.1 Os01g0957900 AK068334.1 - ARM repeat fold domain containing protein 5e-1 At2g28050 pentatricopeptide (PPR) repeat-containing protein S.X. H.G.
0.25 24.1 Os07g0627400 NM_193046.1 - Conserved hypothetical protein 4e-1 At4g35390 AGF1 (AT-hook protein of GA feedback 1) S.X. H.G.
0.25 24.1 Os02g0817800 AF242298.1 - Telomere binding protein-1 2e-8 At3g46590 TRFL1 (TRF-LIKE 1) S.X. H.G.
0.20 16.5 Os12g0112300 CB685051 - - 3e-20 At5g05310 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
41.6 99.9 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
23.6 99.4 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
19.4 99.0 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.8 99.0 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.9 98.8 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.7 98.8 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.3 98.8 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.2 98.7 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.1 98.6 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.7 98.6 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 5e-3 44 Os03g0415700 9631.m02956 - - 2e+0 At2g45070 SEC61 BETA C.G. S.X.
0.03 8e-1 36 Os05g0187600 9633.m00864 - Peptidase aspartic family protein 7e-2 At5g15240 amino acid transporter family protein C.G. S.X.
0.02 8e-3 44 Os01g0828900 9629.m06035 - - 6e-18 At1g07090 LSH6 (LIGHT SENSITIVE HYPOCOTYLS 6) C.G. S.X.
0.02 8e-3 44 Os05g0576850 9633.m04714 - - 1e-1 At2g40510 40S ribosomal protein S26 (RPS26A) C.G. S.X.
0.02 2e-2 42 Os05g0117600 9633.m00183 - Hypothetical protein 4e-1 At2g40510 40S ribosomal protein S26 (RPS26A) C.G. S.X.
0.02 8e-2 40 Os01g0239000 AK121019.1 - Phosphate starvation regulator protein (Regulatoryprotein of P- starvation acclimation response Psr1) 1e-6 At5g44190 GLK2 (GOLDEN2-LIKE 2) C.G. S.X.
0.02 3e+0 34 Os01g0743600 CB629272 - Peptidase S16, lon N-terminal domain containingprotein 2e+0 At4g02620 vacuolar ATPase subunit F family protein C.G. S.X.
0.01 8e-3 44 Os09g0487900 AK120902.1 - Basic helix-loop-helix dimerisation region bHLHdomain containing protein 2e-11 At2g42280 basic helix-loop-helix (bHLH) family protein C.G. S.X.
0.01 3e-2 42 Os02g0196300 AK066028.1 - Bacterial surface antigen (D15) family protein 1e-12 At5g19620 OEP80 (OUTER ENVELOPE PROTEIN OF 80 KDA) C.G. S.X.
0.01 3e-2 42 Os04g0677100 9632.m05672 - Peptidase A1, pepsin family protein 4e-2 At2g18530 protein kinase family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 7e+0 32 Arabidopsis thaliana At5g14930 831345 SAG101 (SENESCENCE-ASSOCIATED GENE 101) encodes an acyl hydrolase involved in senescence . - - - C.G. S.X.
0.03 6e-4 46 Glycine max Gma.12943.1.A1_at CD396744 - - 3e-1 At1g28815 unknown protein C.G. S.X.
0.02 1e+1 30 Hordeum vulgare EBem06_SQ003_C15_x_at EBem06_SQ003_C15 - - 9e-1 At5g60460 sec61beta family protein C.G. S.X.
0.03 2e+0 34 Populus trichocarpa PtpAffx.208402.1.S1_x_at pmrna16702 hypothetical protein - 3e-5 At3g24530 AAA-type ATPase family protein / ankyrin repeat family protein C.G. S.X.
0.03 2e+0 34 Triticum aestivum TaAffx.50258.1.S1_at CA743808 - - 3e+0 At3g07590 small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative C.G. S.X.
0.02 2e+0 32 Vitis vinifera 1622199_at CF514769 - - 2e+0 At4g13395 RTFL12 (ROTUNDIFOLIA LIKE 12) C.G. S.X.
0.02 3e+0 32 Zea mays Zm.13682.1.A1_at AY106889.1 - - 5e+0 At5g62380 ANAC101 (ARABIDOPSIS NAC-DOMAIN PROTEIN 101) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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