CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os05g0339000

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 87.2 Os05g0339000 9633.m02481 - VHS domain containing protein 6e-2 At5g46030 unknown protein S.X. H.G.
0.83 95.8 Os10g0122600 9638.m00247 - Cellular retinaldehyde-binding/triple function,N-terminal domain containing protein 1e-18 At4g36490 SFH12 (SEC14-LIKE 12) S.X. H.G.
0.77 93.1 Os02g0814500 9630.m05656 - Phosphate starvation regulator protein (Regulatoryprotein of P- starvation acclimation response Psr1) 5e-1 At3g13040 myb family transcription factor S.X. H.G.
0.67 87.2 Os01g0533900 AK101194.1 - Multidrug resistance protein 1 homolog 4e-4 At4g18050 PGP9 (P-GLYCOPROTEIN 9) S.X. H.G.
0.67 87.2 Os01g0536400 NM_193243.1 - Isopenicillin N synthase family protein 2e+0 At3g28950 avirulence-responsive protein-related / avirulence induced gene (AIG) protein-related S.X. H.G.
0.46 60.9 Os12g0640700 AK108649.1 - N/apple PAN domain containing protein 8e-1 At5g44500 small nuclear ribonucleoprotein associated protein B, putative / snRNP-B, putative / Sm protein B, putative S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
27.7 99.6 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.2 98.9 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.3 98.8 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.0 98.7 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.5 98.6 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.2 98.5 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.4 98.5 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.1 98.4 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.0 98.4 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
12.4 98.3 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.11 5e-10 67 Os05g0475300 AK065069.1 - VHS domain containing protein 1e-6 At5g01760 VHS domain-containing protein / GAT domain-containing protein C.G. S.X.
0.06 1e-7 59 Os01g0825700 AK070492.1 - VHS2 protein (Fragment) 1e-6 At1g76970 VHS domain-containing protein / GAT domain-containing protein C.G. S.X.
0.02 7e-3 44 Os04g0400700 9632.m03135 - - 4e-1 At4g23810 WRKY53 C.G. S.X.
0.02 7e-3 44 Os11g0202400 9639.m00914 - Cyclin-like F-box domain containing protein 9e-3 At4g27310 zinc finger (B-box type) family protein C.G. S.X.
0.01 3e-5 52 Os05g0394900 AK058958.1 - Conserved hypothetical protein 2e-1 At1g26210 unknown protein C.G. S.X.
0.01 2e-3 46 Os05g0592600 AK073484.1 - Initiation factor 2 family protein 1e-38 At1g76810 eukaryotic translation initiation factor 2 family protein / eIF-2 family protein C.G. S.X.
0.01 7e-3 44 Os10g0486000 AK109052.1 - Metal-dependent phosphohydrolase, HD subdomaincontaining protein 2e-8 At1g17330 metal-dependent phosphohydrolase HD domain-containing protein-related C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 6e-2 40 Arabidopsis thaliana At5g46030 834644 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPVBA - - - C.G. S.X.
0.02 8e-2 40 Glycine max GmaAffx.49094.2.S1_at BM526856 - - 5e-27 At4g12610 transcription initiation factor IIF alpha subunit (TFIIF-alpha) family protein C.G. S.X.
0.02 3e-2 40 Hordeum vulgare Contig2129_x_at Contig2129 - - 1e-65 At4g14320 60S ribosomal protein L36a/L44 (RPL36aB) C.G. S.X.
0.02 5e-3 44 Populus trichocarpa PtpAffx.24931.1.S1_at CV257601 hypothetical protein - 3e-6 At2g38410 VHS domain-containing protein / GAT domain-containing protein C.G. S.X.
0.29 1e-83 311 Triticum aestivum TaAffx.119088.1.S1_at CA719733 - - 6e+0 At5g24370 invertase/pectin methylesterase inhibitor family protein C.G. S.X.
0.02 7e-5 48 Vitis vinifera 1607191_s_at CB980294 hypothetical protein LOC100267076 - 3e-10 At2g38410 VHS domain-containing protein / GAT domain-containing protein C.G. S.X.
0.03 3e-2 40 Zea mays Zm.17576.1.S1_at CO521961 protein transporter - 1e+0 At2g38410 VHS domain-containing protein / GAT domain-containing protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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