Gene omics information

Query gene ID	Os05g0323900
Gene name
Organism	Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.92	99.1	Os05g0323900	AU173300	-	Manganese-superoxide dismutase precursor (EC1.15.1.1)	3e-1	At5g55560	protein kinase family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.57	77.0	Os09g0482100	AB111810.1	-	Heat shock protein 82	0	At5g56030	HSP81-2 (HEAT SHOCK PROTEIN 81-2)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.32	36.3	Os03g0811900	AK122007.1	-	NTGB1 (Fragment)	4e-101	At1g23490	ATARF1 (ADP-RIBOSYLATION FACTOR 1)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.24	22.4	Os11g0660500	D12626.1	-	Translationally controlled tumor protein familyprotein	2e-13	At3g16640	TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.22	19.4	Os08g0480800	AK101599.1	-	TaWIN2	3e-27	At1g78300	GRF2 (GENERAL REGULATORY FACTOR 2)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.15	10.3	Os03g0345200	D12633.1	-	40S ribosomal protein S21	3e-10	At5g27700	structural constituent of ribosome	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.14	9.3	Os12g0567700	AK070647.1	-	-	5e-75	At2g18020	EMB2296 (embryo defective 2296)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.0	96.6	GSM159200	Inflorescence (P4, 10 - 15 cm), biological rep 3	GSE6893	Expression data for reproductive development in rice
4.1	96.0	GSM154937	Root_tZ-treatment_30min_replicate 2	GSE6719	Cytokinin responsive genes in rice
4.1	96.0	GSM159193	Inflorescence (P2, 3 - 5 cm), biological rep 2	GSE6893	Expression data for reproductive development in rice
4.0	95.9	GSM154938	Root_tZ-treatment_30min_replicate 3	GSE6719	Cytokinin responsive genes in rice
4.0	95.9	GSM159194	Inflorescence (P2, 3 - 5 cm), biological rep 3	GSE6893	Expression data for reproductive development in rice
3.8	95.7	GSM195228	Embryo	GSE7951	Genome-wide gene expression profiling of rice stigma
3.7	95.6	GSM159192	Inflorescence (P2, 3 - 5 cm), biological rep 1	GSE6893	Expression data for reproductive development in rice
3.7	95.6	GSM154833	Root_tZ-treatment_30min_replicate 1	GSE6719	Cytokinin responsive genes in rice
3.5	95.3	GSM159272	Rice coleoptiles, 4 days old, anoxic, REPLICATE 2 (Sample #12)	GSE6908	Transcript Profiling of the Aerobic and Anoxic Rice Coleoptile
3.4	95.2	GSM159190	Young inflorescence (P1, upto 3 cm), biological rep 2	GSE6893	Expression data for reproductive development in rice

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.61	0	1727	Os08g0513700	AK104160.1	-	SBP domain containing protein	4e-15	At3g10920	MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.07	1e-7	59	Os06g0659100	9634.m04348	-	Squamosa-promoter binding protein 1	3e-11	At2g33810	SPL3 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 3)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.04	1e-7	59	Os02g0177300	9630.m00762	-	Squamosa-promoter binding protein 1	2e-4	At3g18540	unknown protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.02	1e-4	50	Os03g0278300	AK071965.1	-	Transcriptional coactivator-like protein	6e-12	At5g02530	RNA and export factor-binding protein, putative	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.02	1e-3	46	Os12g0609500	AK071747.1	-	Short-chain dehydrogenase/reductase SDR familyprotein	1e-8	At4g20760	short-chain dehydrogenase/reductase (SDR) family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	1e-4	50	Os04g0119800	AK067558.1	-	Conserved hypothetical protein	1e+0	At2g27260	-	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	6e-1	38	Os07g0564800	AK100860.1	-	Protein of unknown function DUF707 family protein	3e-19	At1g11170	unknown protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	6e-1	38	Os10g0410100	AK109287.1	-	-	2e+0	At3g15640	cytochrome c oxidase family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	6e-1	38	Os10g0410200	NM_196449.1	-	Protein of unknown function DUF635 family protein	5e-4	At2g13770	unknown protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	3e+0	36	Os01g0148000	CB642477	-	Zn-finger (putative), N-recognin domain containingprotein	3e-12	At5g02310	PRT6 (PROTEOLYSIS 6)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	3e-1	38	Arabidopsis thaliana	At5g55560	835650	protein kinase family protein	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOFBVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.01	2e+0	36	Glycine max	GmaAffx.25366.1.S1_at	AW100473	-	-	9e-10	At2g34360	antiporter/ drug transporter/ transporter	C.G.	S.X.	Please select
0.59	0	789	Hordeum vulgare	Contig6338_at	Contig6338	-	-	3e-1	At5g10890	myosin heavy chain-related	C.G.	S.X.	Please select
0.01	4e-1	38	Populus trichocarpa	PtpAffx.219218.1.S1_at	pmrna35074	hypothetical protein	-	3e+0	At4g30450	glycine-rich protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.51	0	726	Triticum aestivum	Ta.6980.1.S1_x_at	BJ275891	-	-	1e-1	At1g54820	protein kinase family protein	C.G.	S.X.	Please select
0.01	4e-1	36	Vitis vinifera	1611593_at	BQ799465	-	-	5e+0	At5g63440	unknown protein	C.G.	S.X.	Please select
0.23	6e-78	291	Zea mays	Zm.13184.1.S1_at	CA409097	-	-	2e-1	At2g20620	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name
C	GO:0006801	The chemical reactions and pathways involving superoxide, the superoxide anion O2- (superoxide free radical), or any compound containing this species.

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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