CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os05g0301700

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.9 Os05g0301700 AK070578.1 - Cytochrome c1 (Fragment) 5e-79 At3g27240 cytochrome c1, putative S.X. H.G.
0.61 81.2 Os01g0649100 AF444195.1 - Malate dehydrogenase 1e-33 At1g53240 malate dehydrogenase (NAD), mitochondrial S.X. H.G.
0.59 78.0 Os05g0553000 AK071143.1 - ATP synthase beta chain, mitochondrial precursor(EC 3.6.3.14) 0 At5g08670 ATP binding / hydrogen ion transporting ATP synthase, rotational mechanism S.X. H.G.
0.50 68.0 Os04g0398500 AK059519.1 - Ubiquinol-cytochrome c reductase iron-sulfursubunit, mitochondrial precursor (EC 1.10.2.2) (Rieskeiron-sulfur protein) (RISP) 7e-10 At5g13430 ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial, putative / Rieske iron-sulfur protein, putative S.X. H.G.
0.50 68.0 Os08g0431500 AK058993.1 - Conserved hypothetical protein 3e-20 At4g16450 unknown protein S.X. H.G.
0.42 53.9 Os07g0495200 AK070990.1 - ATP synthase delta' chain, mitochondrial precursor(EC 3.6.3.14) 1e-1 At5g47030 ATP synthase delta' chain, mitochondrial S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.6 96.3 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
3.7 95.6 GSM431925 Root- +Fe+P biological rep1 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
3.5 95.3 GSM275410 Bala root tip_At the wax layer_rep3 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
3.5 95.3 GSM359915 IR63731 root, control, biological replicate 3 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
3.5 95.3 GSM431926 Root- +Fe+P biological rep2 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
3.3 95.1 GSM359921 Pokkali root, control, biological replicate 3 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
3.3 95.1 GSM67059 IR29 control replicate 2 GSE3053 Rice salt expression
3.2 94.9 GSM67058 IR29 control replicate 1 GSE3053 Rice salt expression
3.1 94.8 GSM275416 Azucena root tip_Before the wax layer_Rep3 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
3.1 94.8 GSM359913 IR63731 root, control, biological replicate 1 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.51 0 833 Os01g0935700 AK069403.1 - Cytochrome c1 (Fragment) 3e-52 At3g27240 cytochrome c1, putative C.G. S.X.
0.26 1e-35 153 Os01g0508700 NM_193736.1 - - 3e+0 At1g21245 wall-associated kinase-related C.G. S.X.
0.20 1e-51 206 Os08g0370000 9636.m02796 - - 2e-1 At5g54410 unknown protein C.G. S.X.
0.16 5e-35 151 Os09g0239700 9637.m00391 - - 6e+0 At5g56670 40S ribosomal protein S30 (RPS30C) C.G. S.X.
0.14 3e-24 115 Os01g0537800 NM_193261.1 - - 1e+0 At4g28740 - C.G. S.X.
0.13 1e-31 139 Os02g0279016 BI803277 - - 2e+0 At3g57860 UVI4-LIKE (UV-B-INSENSITIVE 4-LIKE) C.G. S.X.
0.11 1e-23 113 Os07g0404100 9635.m02067 - - 5e-2 At5g47175 LCR3 (Low-molecular-weight cysteine-rich 3) C.G. S.X.
0.01 4e-1 38 Os07g0404600 9635.m02073 - - 7e-1 Atcg00720 - C.G. S.X.
0.01 4e-1 38 Os07g0535100 AK100978.1 - F-box protein interaction domain containingprotein 3e+0 At5g58710 ROC7 C.G. S.X.
0.01 4e-1 38 Os07g0535200 AK101804.1 - Cyclin-like F-box domain containing protein 3e+0 At4g11570 haloacid dehalogenase-like hydrolase family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.43 5e-79 295 Arabidopsis thaliana At3g27240 822343 cytochrome c1, putative F:electron carrier activity, iron ion binding, heme binding, electron transporter, transferring electrons within CoQH2-cytochrome c reductase complex activity;P:unknown;C:in 6 components;OBMFP - - - C.G. S.X.
0.41 4e-83 309 Glycine max Gma.17435.1.S1_at CD412525 - - 7e-115 At5g40810 cytochrome c1, putative C.G. S.X.
0.58 0 1039 Hordeum vulgare Contig3118_at Contig3118 - - 3e-68 At3g27240 cytochrome c1, putative C.G. S.X.
0.41 2e-85 317 Populus trichocarpa Ptp.2347.1.A1_x_at CV280648 hypothetical protein - 1e-140 At3g27240 cytochrome c1, putative C.G. S.X.
0.54 0 1007 Triticum aestivum Ta.28376.1.S1_at CK167966 - - 1e-73 At3g27240 cytochrome c1, putative C.G. S.X.
0.39 1e-92 339 Vitis vinifera 1608673_at CF512304 hypothetical protein LOC100250724 - 4e-147 At3g27240 cytochrome c1, putative C.G. S.X.
0.53 0 892 Zea mays Zm.788.2.A1_at CD441048 hypothetical protein LOC100194151 - 1e-73 At3g27240 cytochrome c1, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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