CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os05g0301500

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.46 60.9 Os05g0301500 AK067027.1 - Ribophorin I (Fragment) 7e-5 At1g76400 ribophorin I family protein S.X. H.G.
0.86 96.4 Os07g0209000 AK058399.1 - Dolichyl-di-phosphooligosaccharide-proteinglycotransferase (Oligosaccharyltransferase)-like 1e-24 At5g66680 DGL1 S.X. H.G.
0.80 94.6 Os05g0147400 AK062146.1 - T-complex protein 1, zeta subunit (TCP-1-zeta)(CCT-zeta) (CCT-zeta- 1) 6e-67 At5g16070 chaperonin, putative S.X. H.G.
0.77 93.1 Os02g0332200 AK067672.1 - T-complex protein 1 delta subunit 2e-29 At3g18190 chaperonin, putative S.X. H.G.
0.67 87.2 Os06g0538000 AK069949.1 - Chaperonin Cpn60/TCP-1 family protein 5e-83 At5g26360 chaperonin, putative S.X. H.G.
0.53 71.3 Os06g0562600 AK067114.1 - T-complex protein 1, epsilon subunit(TCP-1-epsilon) (CCT-epsilon) (TCP-K36) 2e-88 At1g24510 T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putative S.X. H.G.
0.50 68.0 Os08g0207000 AK058705.1 - 40S ribosomal protein S11 (S18) (YS12) (RP41) 4e-60 At3g48930 EMB1080 (embryo defective 1080) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.5 96.8 GSM275416 Azucena root tip_Before the wax layer_Rep3 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
5.0 96.6 GSM67053 FL478 control replicate 2 GSE3053 Rice salt expression
4.8 96.5 GSM275414 Azucena root tip_Before the wax layer_rep1 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
4.8 96.5 GSM275408 Bala root tip_At the wax layer_rep1 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
4.8 96.5 GSM275410 Bala root tip_At the wax layer_rep3 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
4.6 96.3 GSM67052 FL478 control replicate 1 GSE3053 Rice salt expression
4.6 96.3 GSM275413 Azucena root tip_Buckled at the wax layer_rep3 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
4.6 96.3 GSM275406 Azucena root tip_At the wax layer_rep2 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
4.5 96.3 GSM67059 IR29 control replicate 2 GSE3053 Rice salt expression
4.5 96.3 GSM67055 FL478 salt stressed replicate 1 GSE3053 Rice salt expression
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 2e+0 36 Os01g0568100 9629.m03675 - - 6e-1 At4g20260 DREPP plasma membrane polypeptide family protein C.G. S.X.
0.01 2e+0 36 Os04g0128600 9632.m00298 - - 5e-1 At1g60320 Toll-Interleukin-Resistance (TIR) domain-containing protein C.G. S.X.
0.01 2e+0 36 Os06g0182300 AK100271.1 - Callose synthase 1 catalytic subunit 3e-62 At2g13680 CALS5 (CALLOSE SYNTHASE 5) C.G. S.X.
0.01 2e+0 36 Os06g0479200 AK099423.1 - Hypothetical protein 2e+0 At3g04430 anac049 (Arabidopsis NAC domain containing protein 49) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 7e-5 50 Arabidopsis thaliana At1g76400 843972 ribophorin I family protein F:oligosaccharyl transferase activity, dolichyl-diphosphooligosaccharide-protein glycotransferase activity;P:protein amino acid glycosylation;C:endoplasmic reticulum, membrane;MFOPA - - - C.G. S.X.
0.03 4e-4 48 Glycine max Gma.5152.1.A1_at BI971129 - - 1e+0 At2g16620 protein kinase-related C.G. S.X.
0.72 0 1493 Hordeum vulgare Contig4748_at Contig4748 - - 2e-2 At1g76400 ribophorin I family protein C.G. S.X.
0.03 4e-1 38 Populus trichocarpa Ptp.1302.1.S1_at CK092616 hypothetical protein - 9e-13 At2g01720 ribophorin I family protein C.G. S.X.
0.17 3e-32 141 Triticum aestivum TaAffx.30439.1.S1_at CA625281 - - 1e+0 At4g13080 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative C.G. S.X.
0.01 5e+0 32 Vitis vinifera 1622422_at CD800947 hypothetical protein LOC100251499 - 2e-21 At1g72990 BGAL17 (beta-galactosidase 17) C.G. S.X.
0.68 0 841 Zea mays Zm.13444.1.S1_at CD441205 dolichyl-diphosphooligosaccharide--protein glycosyltransferase 67 kDasubunit - 2e-2 At1g76400 ribophorin I family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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