CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os05g0299600

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 87.2 Os05g0299600 AK100896.1 - Conserved hypothetical protein 2e-2 At3g09480 histone H2B, putative S.X. H.G.
0.53 71.3 Os09g0110200 9637.m00069 - Protein prenyltransferase domain containingprotein 8e-2 At1g29710 pentatricopeptide (PPR) repeat-containing protein S.X. H.G.
0.53 71.3 Os09g0500600 AK066999.1 - DNA topoisomerase III beta-1 (EC 5.99.1.2). Spliceisoform 2 1e-19 At2g32000 DNA topoisomerase family protein S.X. H.G.
0.46 60.9 Os01g0164500 AK068747.1 - ATP-dependent RNA helicase-like protein 2e-11 At5g05450 DEAD/DEAH box helicase, putative (RH18) S.X. H.G.
0.43 55.4 Os05g0487600 AK059850.1 - Conserved hypothetical protein 7e-16 Atmg00690 - S.X. H.G.
0.40 51.1 Os07g0227700 AK120258.1 - Conserved hypothetical protein 2e-5 At4g13970 zinc ion binding S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
31.0 99.7 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
25.4 99.5 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
24.1 99.4 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
23.6 99.4 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
21.3 99.2 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
21.0 99.2 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.6 99.1 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.3 99.0 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.1 99.0 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.8 99.0 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.24 2e-28 129 Os03g0147200 9631.m00457 - - 5e-1 At4g02450 glycine-rich protein C.G. S.X.
0.21 8e-28 127 Os03g0105300 AK059147.1 - Conserved hypothetical protein 1e+0 At3g13432 unknown protein C.G. S.X.
0.14 2e-16 89 Os10g0167800 NM_195037.1 - - 6e-1 At2g14835 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.14 2e-16 89 Os10g0168600 NM_195037.1 - - 6e-1 At2g14835 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.04 6e-41 171 Os05g0299700 AK072411.1 - Expressed protein (Zinc finger-like protein) 5e-3 At3g12630 zinc finger (AN1-like) family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e-2 42 Arabidopsis thaliana At3g09480 820105 histone H2B, putative F:DNA binding;P:nucleosome assembly;C:nucleus, nucleosome;MPOF - - - C.G. S.X.
0.01 4e-1 38 Glycine max GmaAffx.51470.1.S1_at CD390659 - - 6e-27 At2g30710 RabGAP/TBC domain-containing protein C.G. S.X.
0.02 5e-1 36 Hordeum vulgare Contig9920_at Contig9920 - - 7e-1 At3g15095 unknown protein C.G. S.X.
0.02 4e-1 38 Populus trichocarpa PtpAffx.13421.1.S1_at BU823258 - - 2e+0 At3g15870 oxidoreductase C.G. S.X.
0.02 7e-5 50 Triticum aestivum TaAffx.92969.1.A1_at BJ238176 - - 4e+0 At3g30350 unknown protein C.G. S.X.
0.01 1e+0 34 Vitis vinifera 1612008_at CF604996 hypothetical protein LOC100243222 - 1e+0 At4g08790 nitrilase, putative C.G. S.X.
0.02 8e-3 42 Zea mays ZmAffx.1046.1.A1_at AI881792 - - 8e-1 At1g79160 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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