CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os05g0295300

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.76 92.2 Os05g0295300 AK059261.1 - Acetyl-coenzyme A carboxylase (EC 6.4.1.2) 2e+0 At3g24280 SMAP2 (small acidic protein 2) S.X. H.G.
0.56 76.3 Os06g0568000 AK071892.1 - Nonaspanin (TM9SF) family protein 4e-107 At3g13772 endomembrane protein 70, putative S.X. H.G.
0.56 76.3 Os04g0555500 AK108782.1 - The start codon is not identified. 4e-3 At2g45540 WD-40 repeat family protein / beige-related S.X. H.G.
0.54 71.9 Os03g0227000 AK068454.1 - Coatomer gamma subunit (Gamma-coat protein)(Gamma-COP) 1e-25 At4g34450 coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative S.X. H.G.
0.53 71.3 Os07g0564700 AK059018.1 - Hypothetical protein 5e-18 At3g43300 ATMIN7 (ARABIDOPSIS THALIANA HOPM INTERACTOR 7) S.X. H.G.
0.50 68.0 Os01g0911200 AK101333.1 - Ribophorin II family protein 1e-6 At4g21150 HAP6 (HAPLESS 6) S.X. H.G.
0.48 63.7 Os05g0230600 AK070398.1 - WD40-like domain containing protein 1e-7 At5g11560 catalytic S.X. H.G.
0.46 60.9 Os07g0657200 AK072927.1 - WD40-like domain containing protein 3e-8 At3g63460 WD-40 repeat family protein S.X. H.G.
0.45 58.8 Os06g0143900 AK111584.1 - Coatomer protein complex, beta prime 6e-99 At1g52360 coatomer protein complex, subunit beta 2 (beta prime), putative S.X. H.G.
0.40 51.1 Os02g0722300 AK064958.1 - Nonaspanin (TM9SF) family protein 6e-21 At4g12650 - S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.2 96.7 GSM195228 Embryo GSE7951 Genome-wide gene expression profiling of rice stigma
5.1 96.6 GSM302915 emb6D_rep2 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
4.9 96.5 GSM275408 Bala root tip_At the wax layer_rep1 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
4.3 96.1 GSM275410 Bala root tip_At the wax layer_rep3 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
4.3 96.1 GSM302914 emb6D_rep1 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
4.1 96.0 GSM275416 Azucena root tip_Before the wax layer_Rep3 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
3.9 95.8 GSM275406 Azucena root tip_At the wax layer_rep2 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
3.8 95.7 GSM159187 SAM, biological rep 2 GSE6893 Expression data for reproductive development in rice
3.7 95.6 GSM275415 Azucena root tip_Before the wax layer_Rep2 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
3.7 95.6 GSM275407 Azucena root tip_At the wax layer_rep3 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.43 8e-154 547 Os10g0363300 AK058817.1 - - 2e-44 At1g36180 ACC2 (ACETYL-COA CARBOXYLASE 2) C.G. S.X.
0.01 5e-1 40 Os04g0103800 AK110629.1 - Conserved hypothetical protein 2e+0 At5g65480 unknown protein C.G. S.X.
0.01 5e-1 40 Os04g0349550 9632.m02660 - - 6e-1 At3g03490 PEX19-1 (peroxin 19-1) C.G. S.X.
0.01 2e+0 38 Os04g0187000 9632.m00957 - - 1e+0 At3g29633 unknown protein C.G. S.X.
0.01 1e+0 36 Os02g0517900 AK062274.1 - Conserved hypothetical protein 1e+0 At2g19802 unknown protein C.G. S.X.
0.01 1e+0 36 Os03g0301200 AK119578.1 - COBRA-like protein 7 precursor 2e-5 At3g16860 COBL8 (COBRA-LIKE PROTEIN 8 PRECURSOR) C.G. S.X.
0.01 1e+0 36 Os09g0481100 AK063554.1 - Phosphatidylinositol transfer-like protein IV 5e-6 At2g18180 SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative C.G. S.X.
0.01 1e+0 36 Os12g0612300 AK070162.1 - Hypothetical protein 3e-1 At5g14990 - C.G. S.X.
0.01 5e+0 34 Os12g0155300 AK060480.1 - Hypothetical protein 3e+0 At5g03837 unknown protein C.G. S.X.
0.00 2e+0 38 Os04g0638200 AK100418.1 - Hypothetical protein 3e+0 At2g38270 CXIP2 (CAX-INTERACTING PROTEIN 2) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e+0 34 Arabidopsis thaliana At3g24280 822016 SMAP2 (small acidic protein 2) F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;P - - - C.G. S.X.
0.04 5e-2 40 Glycine max Gma.6558.1.S1_s_at BU084402 - - 2e-6 At1g36160 ACC1 (ACETYL-COENZYME A CARBOXYLASE 1) C.G. S.X.
0.29 2e-63 242 Hordeum vulgare Contig5989_s_at Contig5989 - - 6e-18 At1g36180 ACC2 (ACETYL-COA CARBOXYLASE 2) C.G. S.X.
0.04 5e-2 40 Populus trichocarpa Ptp.6482.1.S1_s_at BI129616 hypothetical protein - 1e+0 At4g36740 ATHB40 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 40) C.G. S.X.
0.12 5e-51 202 Triticum aestivum Ta.114.1.S1_at AF029895.1 acetyl-coenzyme A carboxylase - 1e-21 At1g36160 ACC1 (ACETYL-COENZYME A CARBOXYLASE 1) C.G. S.X.
0.08 1e-8 59 Vitis vinifera 1620412_at CF511306 hypothetical protein LOC100247288 - 6e-10 At1g36160 ACC1 (ACETYL-COENZYME A CARBOXYLASE 1) C.G. S.X.
0.27 1e-46 186 Zea mays Zm.264.2.A1_x_at CF012670 acetyl-coenzyme A carboxylase - 8e+0 At5g02890 transferase family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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