CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os05g0276500

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.50 68.0 Os05g0276500 U30479.1 - Expansin Os-EXPA3 5e-1 At2g39700 ATEXPA4 (ARABIDOPSIS THALIANA EXPANSIN A4) S.X. H.G.
0.91 98.9 Os07g0630400 AK060320.1 - Ribonuclease T2 family protein 2e+0 At3g22580 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein S.X. H.G.
0.73 91.1 Os08g0477500 AU033142 - S.tuberosum patatin (Fragment) 2e+0 At1g28280 VQ motif-containing protein S.X. H.G.
0.67 87.2 Os02g0157600 9630.m00558 - Rhodanese-like domain containing protein 6e+0 At5g66190 FNR1 (FERREDOXIN-NADP(+)-OXIDOREDUCTASE 1) S.X. H.G.
0.60 79.7 Os07g0104500 AK108824.1 - Haem peroxidase, plant/fungal/bacterial familyprotein 2e-1 At2g20080 unknown protein S.X. H.G.
0.48 63.7 Os02g0512000 AK108786.1 - Auxin responsive SAUR protein family protein 2e-1 At5g33390 glycine-rich protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
16.7 98.8 GSM359920 Pokkali root, control, biological replicate 2 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
15.2 98.7 GSM159179 Root, 7-day-old Seedling, biological rep 3 GSE6893 Expression data for reproductive development in rice
14.6 98.6 GSM100443 Rice Bala 0ppm Arsenate (Control) Rep1 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
14.4 98.6 GSM359918 IR63731 root, salt-treated, biological replicate 3 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
13.2 98.4 GSM359915 IR63731 root, control, biological replicate 3 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
11.8 98.3 GSM431927 Root- -Fe+P biological rep1 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
10.8 98.1 GSM431928 Root- -Fe+P biological rep2 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
10.0 98.0 GSM359908 IR29 root, control, biological replicate 1 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
9.6 97.9 GSM149411 Rice Bala 0ppm Arsenate (Control) Rep3 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
9.0 97.8 GSM359903 FL478 root, control, biological replicate 2 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.41 2e-32 141 Os01g0248900 AK111100.1 - Expansin EXPA5 5e-10 At2g37640 EXP3 C.G. S.X.
0.28 2e-24 115 Os01g0249100 9629.m01446 - Expansin Os-EXPA3 6e-6 At2g39700 ATEXPA4 (ARABIDOPSIS THALIANA EXPANSIN A4) C.G. S.X.
0.25 4e-22 107 Os10g0439200 9638.m02604 - Alpha-expansin OsEXPA25 1e-4 At2g37640 EXP3 C.G. S.X.
0.20 5e-18 93 Os03g0155300 AY046929.1 - Expansin/Lol pI family protein 6e-7 At1g20190 ATEXPA11 (ARABIDOPSIS THALIANA EXPANSIN 11) C.G. S.X.
0.20 8e-17 89 Os02g0267200 9630.m01561 - Alpha-expansin OsEXPA13 2e-6 At1g20190 ATEXPA11 (ARABIDOPSIS THALIANA EXPANSIN 11) C.G. S.X.
0.17 5e-18 93 Os03g0428700 AK111273.1 - Alpha-expansin OsEXPA19 2e-3 At2g37640 EXP3 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.08 5e-1 36 Arabidopsis thaliana At2g39700 818553 ATEXPA4 (ARABIDOPSIS THALIANA EXPANSIN A4) putative expansin. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. - - - C.G. S.X.
0.07 8e-4 46 Glycine max GmaAffx.93176.1.S1_s_at CF808901 expansin - 2e-24 At2g28950 ATEXPA6 (ARABIDOPSIS THALIANA EXPANSIN A6) C.G. S.X.
0.42 2e-36 153 Hordeum vulgare Contig16079_at Contig16079 - - 1e-4 At2g37640 EXP3 C.G. S.X.
0.03 3e+0 34 Populus trichocarpa PtpAffx.214829.1.S1_at pmrna28706 hypothetical protein - 9e-5 At3g15370 ATEXPA12 (ARABIDOPSIS THALIANA EXPANSIN 12) C.G. S.X.
0.36 3e-58 226 Triticum aestivum Ta.21031.1.S1_at AY543530.1 - - 4e-5 At2g39700 ATEXPA4 (ARABIDOPSIS THALIANA EXPANSIN A4) C.G. S.X.
0.05 6e-1 34 Vitis vinifera 1608191_at CD798831 hypothetical protein LOC100245911 - 4e-20 At2g39700 ATEXPA4 (ARABIDOPSIS THALIANA EXPANSIN A4) C.G. S.X.
0.20 1e-12 73 Zea mays Zm.665.1.S1_at AF332169.1 alpha expansin1 - 7e-13 At2g37640 EXP3 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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