CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os05g0258400

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.79 93.6 Os05g0258400 9633.m01517 - Protein kinase domain containing protein 2e-11 At1g53430 leucine-rich repeat family protein / protein kinase family protein S.X. H.G.
0.68 87.5 Os05g0596500 AK070817.1 - Zn-finger, RING domain containing protein 7e-1 At5g63480 unknown protein S.X. H.G.
0.66 83.9 Os01g0678800 AK062840.1 - Heavy metal transport/detoxification proteindomain containing protein 3e-1 At1g20220 nucleic acid binding S.X. H.G.
0.66 83.9 Os09g0447500 AK110565.1 - Cytochrome P450 family protein 6e-2 At1g13110 CYP71B7 S.X. H.G.
0.65 83.8 Os08g0108700 9636.m00070 - Conserved hypothetical protein 9e-2 At3g21260 glycolipid transfer protein-related S.X. H.G.
0.65 83.8 Os09g0280500 AK106988.1 - Basic-leucine zipper (bZIP) transcription factordomain containing protein 7e-2 At3g12250 TGA6 (TGACG MOTIF-BINDING FACTOR 6) S.X. H.G.
0.65 83.8 Os07g0421300 AK121014.1 - Glycoside hydrolase, family 31 protein 7e-15 At3g23640 HGL1 (heteroglycan glucosidase 1) S.X. H.G.
0.64 83.4 Os03g0216700 AK101556.1 - Multi antimicrobial extrusion protein MatE familyprotein 2e-2 At5g65160 tetratricopeptide repeat (TPR)-containing protein S.X. H.G.
0.60 79.7 Os12g0183200 9640.m00762 - 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7)(3'(2'),5- bisphosphonucleoside 3'(2')-phosphohydrolase)(DPNPase) 3e-2 At5g63990 3'(2'),5'-bisphosphate nucleotidase, putative / inositol polyphosphate 1-phosphatase, putative S.X. H.G.
0.58 77.0 Os12g0639200 AK122160.1 - AAA ATPase, central region domain containingprotein 4e-3 At4g05380 AAA-type ATPase family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
20.4 99.1 GSM359910 IR29 root, salt-treated, biological replicate 1 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
17.8 98.9 GSM159183 Y Leaf, biological rep 1 GSE6893 Expression data for reproductive development in rice
16.1 98.7 GSM159184 Y Leaf, biological rep 2 GSE6893 Expression data for reproductive development in rice
15.6 98.7 GSM359912 IR29 root, salt-treated, biological replicate 3 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
12.3 98.3 GSM149411 Rice Bala 0ppm Arsenate (Control) Rep3 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
12.0 98.3 GSM262004 IAC165, 4 days after infection with S. hermonthica, biological replicate #1 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
12.0 98.3 GSM359909 IR29 root, control, biological replicate 2 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
9.9 98.0 GSM359922 Pokkali root, salt-treated, biological replicate 1 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
8.0 97.6 GSM262005 IAC165, 4 days after infection with S. hermonthica, biological replicate #2 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
8.0 97.6 GSM359908 IR29 root, control, biological replicate 1 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.65 8e-124 446 Os05g0263100 CB672928 - - 1e-2 At4g04960 lectin protein kinase, putative C.G. S.X.
0.61 5e-88 327 Os05g0256100 AK073574.1 - Protein kinase domain containing protein 3e-8 At1g53430 leucine-rich repeat family protein / protein kinase family protein C.G. S.X.
0.58 7e-115 416 Os04g0291900 9632.m02077 - Protein kinase family protein 3e-4 At1g53430 leucine-rich repeat family protein / protein kinase family protein C.G. S.X.
0.57 4e-98 361 Os05g0253200 AK066537.1 - Protein kinase domain containing protein 3e-2 At1g56130 leucine-rich repeat family protein / protein kinase family protein C.G. S.X.
0.56 1e-119 432 Os05g0256500 9633.m01499 - Protein kinase domain containing protein 4e-7 At1g53430 leucine-rich repeat family protein / protein kinase family protein C.G. S.X.
0.52 1e-119 432 Os08g0203600 AK064968.1 - Protein kinase domain containing protein 1e-4 At1g53430 leucine-rich repeat family protein / protein kinase family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 2e-11 71 Arabidopsis thaliana At1g53430 841778 leucine-rich repeat family protein / protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;PMOBFVA - - - C.G. S.X.
0.02 2e-6 56 Glycine max GmaAffx.45362.1.S1_at AW507656 - - 3e-1 At4g28350 lectin protein kinase family protein C.G. S.X.
0.02 3e-3 44 Hordeum vulgare Contig15337_at Contig15337 - - 1e-2 At4g21366 ATP binding / protein tyrosine kinase C.G. S.X.
0.05 8e-6 54 Populus trichocarpa PtpAffx.207220.1.S1_at pmrna14323 hypothetical protein - 5e-16 At1g56145 leucine-rich repeat family protein / protein kinase family protein C.G. S.X.
0.09 1e-16 89 Triticum aestivum TaAffx.80605.1.S1_at CA694818 - - 2e-2 At5g01530 chlorophyll A-B binding protein CP29 (LHCB4) C.G. S.X.
0.06 1e-4 48 Vitis vinifera 1620502_at CF208333 hypothetical protein LOC100256223 - 1e-14 At1g56140 leucine-rich repeat family protein / protein kinase family protein C.G. S.X.
0.01 2e+0 34 Zea mays Zm.4575.1.A1_at AI737153 anaphase-promoting complex subunit 11 - 3e-14 At3g05870 APC11 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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