CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os05g0254700

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.82 95.0 Os05g0254700 9633.m01477 - - 2e-1 At5g41440 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.55 73.7 Os03g0326400 9631.m02092 - - 2e+1 At5g07230 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein S.X. H.G.
0.48 63.7 Os04g0188301 9632.m00963 - - 1e-2 At5g20000 26S proteasome AAA-ATPase subunit, putative S.X. H.G.
0.44 58.1 Os02g0604600 9630.m03772 - - 6e-1 At1g49050 aspartyl protease family protein S.X. H.G.
0.33 38.8 Os04g0175100 9632.m00824 - - 7e-2 At3g19390 cysteine proteinase, putative / thiol protease, putative S.X. H.G.
0.30 32.7 Os11g0115000 9639.m00140 - - 5e+0 At3g60530 zinc finger (GATA type) family protein S.X. H.G.
0.27 27.5 Os03g0567500 9631.m03544 - - 1e+1 At5g28050 cytidine/deoxycytidylate deaminase family protein S.X. H.G.
0.22 19.4 Os12g0586500 AK107528.1 - - 5e-3 At1g27770 ACA1 (AUTO-INHIBITED CA2+-ATPASE 1) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
103.8 100.0 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
47.1 99.9 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
32.4 99.8 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
29.3 99.7 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
24.8 99.5 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
22.4 99.3 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
20.6 99.1 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.6 99.1 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.9 99.0 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.2 98.8 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.62 5e-56 218 Os05g0254600 9633.m01475 - - 6e+0 At5g09600 SDH3-1 C.G. S.X.
0.60 5e-127 454 Os05g0253600 9633.m01469 - - 2e-1 At5g41440 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.17 6e-31 135 Os09g0276400 9637.m00802 - - 2e-1 At1g62333 unknown protein C.G. S.X.
0.16 2e-27 123 Os09g0276500 9637.m00803 - - 1e+1 At5g45350 proline-rich family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 2e-1 36 Arabidopsis thaliana At5g41440 834145 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFV - - - C.G. S.X.
0.06 2e-2 40 Glycine max GmaAffx.35592.1.S1_at AW394815 - - 2e-1 At5g17120 - C.G. S.X.
0.04 1e-1 36 Hordeum vulgare HW08A17u_at HW08A17u - - 4e+0 At1g32540 LOL1 (LSD ONE LIKE 1) C.G. S.X.
0.06 8e-2 38 Populus trichocarpa PtpAffx.219274.1.S1_at pmrna35144 hypothetical protein - 2e-3 At4g15460 glycine-rich protein C.G. S.X.
0.05 1e-2 40 Triticum aestivum TaAffx.105862.1.S1_at CA728823 - - 5e+0 At4g08740 unknown protein C.G. S.X.
0.05 1e+0 32 Vitis vinifera 1611048_at CB970151 hypothetical protein LOC100255990 - 2e-21 At4g32390 phosphate translocator-related C.G. S.X.
0.04 4e-1 34 Zea mays Zm.16191.1.S1_at BF727710 Hypothetical protein LOC100191371 - 9e-1 At4g08240 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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