CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os05g0244500

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.46 60.9 Os05g0244500 AK064349.1 - Glycoside hydrolase, family 5 protein 4e+0 At2g42820 HVA22F (HVA22-LIKE PROTEIN F) S.X. H.G.
0.77 93.1 Os08g0445000 AK106866.1 - Zn-finger, RING domain containing protein 1e-3 At5g57750 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.56 76.3 Os01g0262500 AK071545.1 - TRAM, LAG1 and CLN8 homology domain containingprotein 4e-1 At3g51110 crooked neck protein, putative / cell cycle protein, putative S.X. H.G.
0.48 63.7 Os01g0857600 CB965854 - Conserved hypothetical protein 8e-2 At4g17480 palmitoyl protein thioesterase family protein S.X. H.G.
0.42 53.9 Os05g0227600 AY224438.1 - Conserved hypothetical protein 3e-6 At2g24060 translation initiation factor 3 (IF-3) family protein S.X. H.G.
0.27 27.5 Os02g0158300 AU162361 - KpsF/GutQ family protein 5e-13 At3g54690 sugar isomerase (SIS) domain-containing protein / CBS domain-containing protein S.X. H.G.
0.21 17.9 Os06g0531900 AK067909.1 - Lipolytic enzyme, G-D-S-L family protein 8e-1 At3g16100 ATRABG3C (ARABIDOPSIS RAB GTPASE HOMOLOG G3C) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
10.5 98.1 GSM67052 FL478 control replicate 1 GSE3053 Rice salt expression
9.2 97.9 GSM99861 TCHW P4_m103 salt stress, biological rep1 GSE4438 Expression data from rice under salinity stress
9.2 97.9 GSM99858 TCHW P1_m103 control, biological rep1 GSE4438 Expression data from rice under salinity stress
8.9 97.8 GSM67054 FL478 control replicate 3 GSE3053 Rice salt expression
8.4 97.7 GSM67053 FL478 control replicate 2 GSE3053 Rice salt expression
8.1 97.7 GSM99860 TCHW P3_m103 control, biological rep3 GSE4438 Expression data from rice under salinity stress
7.7 97.6 GSM67056 FL478 salt stressed replicate 2 GSE3053 Rice salt expression
7.5 97.5 GSM99874 TCHW P17_agami salt stress, biological rep2 GSE4438 Expression data from rice under salinity stress
7.3 97.5 GSM67058 IR29 control replicate 1 GSE3053 Rice salt expression
6.9 97.3 GSM99873 TCHW P16_agami salt stress, biological rep1 GSE4438 Expression data from rice under salinity stress
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.24 6e-19 97 Os10g0370500 AK065000.1 - Glycoside hydrolase, family 5 protein 2e-2 At5g37550 unknown protein C.G. S.X.
0.14 8e-12 73 Os10g0370800 AK122082.1 - Exo-1,3-beta-glucanase precursor (EC 3.2.1.58)(Fragment) 6e-1 At2g40340 AP2 domain-containing transcription factor, putative (DRE2B) C.G. S.X.
0.06 4e-20 101 Os10g0370600 AK062606.1 - Hypothetical protein 5e-3 At5g37550 unknown protein C.G. S.X.
0.02 1e-4 50 Os12g0140500 9640.m00381 - - 6e-1 At4g21480 carbohydrate transmembrane transporter/ sugar:hydrogen symporter C.G. S.X.
0.01 3e-5 52 Os01g0871800 AK064787.1 - Conserved hypothetical protein 5e-1 At4g13530 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 4e+0 34 Arabidopsis thaliana At2g42820 818882 HVA22F (HVA22-LIKE PROTEIN F) F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPFO - - - C.G. S.X.
0.07 5e-3 44 Glycine max Gma.18015.1.S1_at BE659748 - - 6e-1 At1g54445 - C.G. S.X.
0.12 4e-23 109 Hordeum vulgare HU10K22u_s_at HU10K22u - - 1e+0 At3g13170 ATSPO11-1 C.G. S.X.
0.07 2e-12 75 Populus trichocarpa PtpAffx.205490.1.S1_at pmrna10855 hypothetical protein - 4e-1 At2g22320 unknown protein C.G. S.X.
0.27 2e-38 161 Triticum aestivum Ta.19591.1.A1_at CD873269 - - 6e-1 At1g06040 STO (SALT TOLERANCE) C.G. S.X.
0.06 1e+0 34 Vitis vinifera 1622307_at CF413911 - - 2e+0 At5g16110 unknown protein C.G. S.X.
0.25 6e-34 145 Zea mays Zm.6450.1.S1_at CF245049 cellulase containing protein - 4e+0 At3g04890 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0005975 The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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