CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os05g0238200

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.87 96.6 Os05g0238200 9633.m01306 - Ubiquitin ligase SINAT5 (EC 6.3.2.-) (Seven inabsentia homolog 5) 6e-20 At3g61790 seven in absentia (SINA) family protein S.X. H.G.
0.49 64.4 Os05g0562200 AK109438.2 - Drought induced 19 family protein 8e-1 At2g37860 LCD1 (LOWER CELL DENSITY 1) S.X. H.G.
0.45 58.8 Os01g0254900 AK068204.1 - Syntaxin 1e-5 At5g46860 VAM3 S.X. H.G.
0.43 55.4 Os05g0411600 AK101609.1 - Single-stranded nucleic acid binding R3H domaincontaining protein 3e-3 At2g40960 nucleic acid binding S.X. H.G.
0.43 55.4 Os02g0826400 C98392 - Conserved hypothetical protein 7e-2 At4g24026 unknown protein S.X. H.G.
0.38 46.9 Os03g0791800 AB079798.1 - Rad6 (Ubiquitin carrier protein) 2e-46 At2g02760 ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) S.X. H.G.
0.37 45.0 Os10g0393100 AK072853.1 - Peptidase A22B, minor histocompatibility antigenH13 family protein 5e-2 At2g26520 unknown protein S.X. H.G.
0.35 41.7 Os05g0113500 AB118017.1 - Conserved hypothetical protein 8e-1 At4g12740 adenine-DNA glycosylase-related / MYH-related S.X. H.G.
0.34 40.0 Os02g0721600 AK111506.1 - WD-repeat protein-like 3e-10 At3g13340 WD-40 repeat family protein S.X. H.G.
0.34 40.0 Os06g0183900 AK102112.1 - Protein of unknown function DUF602 family protein 1e+1 Atmg00516 - S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
6.9 97.3 GSM302916 endo6D_rep1 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
4.0 95.9 GSM278844 WuYun3-RSV infected, biological rep1 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
3.7 95.6 GSM278852 KT95-418-RSV infected, biological rep3 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
3.7 95.6 GSM278848 WuYun3-non-infected, biological rep2 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
3.7 95.6 GSM302918 leaf_rep1 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
3.7 95.6 GSM159200 Inflorescence (P4, 10 - 15 cm), biological rep 3 GSE6893 Expression data for reproductive development in rice
3.5 95.3 GSM159195 Inflorescence (P3, 5 - 10 cm), biological rep 1 GSE6893 Expression data for reproductive development in rice
3.3 95.1 GSM159196 Inflorescence (P3, 5 - 10 cm), biological rep 2 GSE6893 Expression data for reproductive development in rice
3.3 95.1 GSM375775 slr1 (k1001)_ shoot_replicate 2 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
3.2 94.9 GSM302917 endo6D_rep2 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.92 0 2101 Os02g0293400 AK072985.1 - Ubiquitin ligase SINAT5 (EC 6.3.2.-) (Seven inabsentia homolog 5). Splice isoform 2 6e-45 At3g61790 seven in absentia (SINA) family protein C.G. S.X.
0.53 0 728 Os01g0234900 NM_188653.1 - Ubiquitin ligase SINAT5 (EC 6.3.2.-) (Seven inabsentia homolog 5). Splice isoform 2 1e-38 At3g61790 seven in absentia (SINA) family protein C.G. S.X.
0.19 3e-20 101 Os07g0659800 AK107155.1 - Ubiquitin ligase SINAT5 (EC 6.3.2.-) (Seven inabsentia homolog 5). Splice isoform 2 5e-8 At3g61790 seven in absentia (SINA) family protein C.G. S.X.
0.16 2e-27 125 Os02g0128800 AK119901.1 - Seven in absentia protein family protein 3e-15 At4g27880 seven in absentia (SINA) family protein C.G. S.X.
0.04 3e-20 101 Os03g0297700 AK120200.1 - The start codon is not identified. 3e+0 At5g10310 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.41 6e-20 99 Arabidopsis thaliana At3g61790 825352 seven in absentia (SINA) family protein F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:multicellular organismal development, ubiquitin-dependent protein catabolic process, protein ubiquitination;C:nucleus;MPOF - - - C.G. S.X.
0.25 8e-20 99 Glycine max Gma.5088.2.S1_at CA937805 - - 4e-36 At3g61790 seven in absentia (SINA) family protein C.G. S.X.
0.60 0 890 Hordeum vulgare Contig14690_at Contig14690 - - 4e-27 At3g61790 seven in absentia (SINA) family protein C.G. S.X.
0.37 2e-26 121 Populus trichocarpa PtpAffx.19537.2.S1_s_at CV225503 hypothetical protein - 4e-104 At3g61790 seven in absentia (SINA) family protein C.G. S.X.
0.47 0 670 Triticum aestivum Ta.1658.1.S1_at CA597357 - - 1e-27 At3g61790 seven in absentia (SINA) family protein C.G. S.X.
0.42 2e-91 335 Vitis vinifera 1609250_at Y18471.1 SINA1p - 2e-60 At3g61790 seven in absentia (SINA) family protein C.G. S.X.
0.54 0 910 Zea mays Zm.13813.1.S1_at CF011226 hypothetical protein LOC100272771 - 7e-26 At3g61790 seven in absentia (SINA) family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006511 The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein.
L GO:0007275 The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult).
L GO:0016567 The process by which one or more ubiquitin moieties are added to a protein.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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