CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os05g0227600

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.54 71.9 Os05g0227600 AY224438.1 - Conserved hypothetical protein 3e-6 At2g24060 translation initiation factor 3 (IF-3) family protein S.X. H.G.
0.67 87.2 Os08g0445000 AK106866.1 - Zn-finger, RING domain containing protein 1e-3 At5g57750 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.58 77.0 Os04g0644400 AK061322.1 - Proline-rich-like protein 6e-1 At3g55880 unknown protein S.X. H.G.
0.54 71.9 Os01g0262500 AK071545.1 - TRAM, LAG1 and CLN8 homology domain containingprotein 4e-1 At3g51110 crooked neck protein, putative / cell cycle protein, putative S.X. H.G.
0.48 63.7 Os02g0647900 AK060824.1 - Aldehyde dehydrogenase domain containing protein 3e-1 At5g48690 - S.X. H.G.
0.44 58.1 Os01g0857600 CB965854 - Conserved hypothetical protein 8e-2 At4g17480 palmitoyl protein thioesterase family protein S.X. H.G.
0.38 46.9 Os08g0460000 AB010876.1 - Germin-like protein 5 (Germin-like protein 1) 5e-1 At3g51060 STY1 (STYLISH 1) S.X. H.G.
0.33 38.8 Os03g0323900 AK108122.1 - Plant lipid transfer/seed storage/trypsin-alphaamylase inhibitor domain containing protein 1e-1 At1g04445 zinc finger (C2H2 type) family protein S.X. H.G.
0.33 38.8 Os06g0531900 AK067909.1 - Lipolytic enzyme, G-D-S-L family protein 8e-1 At3g16100 ATRABG3C (ARABIDOPSIS RAB GTPASE HOMOLOG G3C) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.2 96.7 GSM159203 Inflorescence (P5, 15 - 22 cm), biological rep 3 GSE6893 Expression data for reproductive development in rice
5.0 96.6 GSM99859 TCHW P2_m103 control, biological rep2 GSE4438 Expression data from rice under salinity stress
4.8 96.5 GSM99868 TCHW P11_ir29 salt stress, biological rep2 GSE4438 Expression data from rice under salinity stress
4.7 96.4 GSM99861 TCHW P4_m103 salt stress, biological rep1 GSE4438 Expression data from rice under salinity stress
4.7 96.4 GSM99864 TCHW P7_ir29 control, biological rep1 GSE4438 Expression data from rice under salinity stress
4.5 96.3 GSM99865 TCHW P8_ir29 control, biological rep2 GSE4438 Expression data from rice under salinity stress
4.5 96.3 GSM99872 TCHW P15_agami control, biological rep3 GSE4438 Expression data from rice under salinity stress
4.3 96.1 GSM99860 TCHW P3_m103 control, biological rep3 GSE4438 Expression data from rice under salinity stress
4.2 96.0 GSM99862 TCHW P5_m103 salt stress, biological rep2 GSE4438 Expression data from rice under salinity stress
4.2 96.0 GSM99858 TCHW P1_m103 control, biological rep1 GSE4438 Expression data from rice under salinity stress
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.67 4e-106 387 Os05g0226900 AF337054.1 - Conserved hypothetical protein 3e-3 At2g43970 La domain-containing protein C.G. S.X.
0.09 7e-4 46 Os05g0225800 AK070646.1 - Szp protein 9e+0 At5g66815 unknown protein C.G. S.X.
0.08 2e-9 63 Os07g0418600 AK105956.1 - Conserved hypothetical protein 2e+0 At4g29080 PAP2 (PHYTOCHROME-ASSOCIATED PROTEIN 2) C.G. S.X.
0.08 1e-7 57 Os07g0418700 AK105945.1 - Conserved hypothetical protein 2e+0 At5g22950 VPS24.1 C.G. S.X.
0.05 3e-17 91 Os06g0303800 AK100772.1 - Hypothetical protein 1e-1 At5g56170 - C.G. S.X.
0.04 3e-20 101 Os02g0184100 AK073734.1 - Conserved hypothetical protein 2e-3 At3g51880 HMGB1 (HIGH MOBILITY GROUP B 1) C.G. S.X.
0.03 3e-17 91 Os09g0271000 AK102955.1 - Conserved hypothetical protein 2e+0 At5g55890 unknown protein C.G. S.X.
0.03 1e-2 42 Os10g0150600 AK072923.1 - Protein of unknown function DUF1210 family protein 5e-1 At2g01760 ARR14 (ARABIDOPSIS RESPONSE REGULATOR 14) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 3e-6 54 Arabidopsis thaliana At2g24060 816940 translation initiation factor 3 (IF-3) family protein F:translation initiation factor activity;P:translational initiation;C:chloroplast;OBMPFVA - - - C.G. S.X.
0.03 9e-1 36 Glycine max GmaAffx.86568.1.S1_at BG881872 - - 3e-6 At2g39290 PGP1 (PHOSPHATIDYLGLYCEROLPHOSPHATE SYNTHASE 1) C.G. S.X.
0.24 1e-6 54 Hordeum vulgare Contig3588_s_at Contig3588 - - 1e-1 At5g05820 phosphate translocator-related C.G. S.X.
0.03 2e-1 38 Populus trichocarpa PtpAffx.5078.6.S1_a_at CA823667 hypothetical protein - 5e+0 At2g45660 AGL20 (AGAMOUS-LIKE 20) C.G. S.X.
0.30 2e-7 57 Triticum aestivum Ta.14168.1.S1_at BJ263863 proline-rich protein - 2e-1 At2g24060 translation initiation factor 3 (IF-3) family protein C.G. S.X.
0.04 5e-2 38 Vitis vinifera 1607581_at CF403327 hypothetical protein LOC100258708 - 2e-1 At3g09700 DNAJ heat shock N-terminal domain-containing protein C.G. S.X.
0.25 1e-21 103 Zea mays Zm.13367.1.S1_at Y17332.1 proline-rich protein - 5e-2 At1g12610 DDF1 (DWARF AND DELAYED FLOWERING 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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