CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os05g0225100

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.9 Os05g0225100 AK109834.1 - Conserved hypothetical protein 2e-1 At1g02065 SPL8 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 8) S.X. H.G.
0.83 95.8 Os04g0422700 AK111485.1 - Conserved hypothetical protein 5e-1 At2g11005 glycine-rich protein S.X. H.G.
0.71 89.6 Os12g0448100 9640.m02506 - - 1e+0 At4g16240 unknown protein S.X. H.G.
0.67 87.2 Os05g0116600 AK109828.1 - Cyclin-like F-box domain containing protein 3e+0 At2g27720 60S acidic ribosomal protein P2 (RPP2A) S.X. H.G.
0.60 79.7 Os11g0295700 9639.m01769 - - 5e+0 At4g39570 kelch repeat-containing F-box family protein S.X. H.G.
0.33 38.8 Os10g0191200 NM_195295.1 - - 3e+0 At1g55830 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
235.7 100.0 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
37.5 99.8 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
14.3 98.6 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
13.3 98.4 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.6 98.2 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.8 98.0 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.0 97.8 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.3 97.7 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.0 97.6 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.8 97.6 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.35 4e-140 500 Os01g0341900 9629.m02310 - - 4e-2 At4g28730 glutaredoxin family protein C.G. S.X.
0.24 7e-117 422 Os07g0561900 AK109697.1 - Conserved hypothetical protein 5e+0 At4g24026 unknown protein C.G. S.X.
0.23 6e-74 280 Os12g0213000 9640.m01042 - - 5e-1 At3g20310 ERF7 (ETHYLINE RESPONSE FACTOR 7) C.G. S.X.
0.20 3e-88 327 Os07g0243500 NM_186825.1 - - 3e+0 At5g62180 AtCXE20 (Arabidopsis thaliana carboxyesterase 20) C.G. S.X.
0.16 3e-76 287 Os10g0330580 NM_195757.1 - - 2e+0 At1g30475 - C.G. S.X.
0.11 1e-102 375 Os01g0809000 AK119363.1 - Conserved hypothetical protein 4e-1 At1g12830 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e-1 38 Arabidopsis thaliana At1g02065 839275 SPL8 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 8) Encodes an SBP-box gene, a member of the SPL gene family. Mutants are affected in micro- and megasporogenesis, trichome formation on sepals, and stamen filament elongation. - - - C.G. S.X.
0.02 3e-1 38 Glycine max GmaAffx.19819.1.A1_at BU549095 - - 6e-3 At1g21810 - C.G. S.X.
0.02 1e-1 38 Hordeum vulgare Contig15188_at Contig15188 - - 8e-2 At3g28950 avirulence-responsive protein-related / avirulence induced gene (AIG) protein-related C.G. S.X.
0.02 3e-1 38 Populus trichocarpa PtpAffx.216776.1.S1_at pmrna31769 hypothetical protein - 2e-1 At3g13770 pentatricopeptide (PPR) repeat-containing protein C.G. S.X.
0.02 9e-1 36 Triticum aestivum TaAffx.82001.1.S1_at CA679135 - - 7e-2 At5g47700 60S acidic ribosomal protein P1 (RPP1C) C.G. S.X.
0.02 2e-1 36 Vitis vinifera 1619018_at CF414864 hypothetical protein LOC100254250 - 6e-2 At5g54850 unknown protein C.G. S.X.
0.02 9e-2 38 Zea mays Zm.16203.1.A1_at AY104535.1 - - 2e-13 At4g15000 60S ribosomal protein L27 (RPL27C) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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