Gene omics information

Query gene ID	Os05g0209100
Gene name
Organism	Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.83	95.8	Os05g0209100	AK069043.1	-	Glycoside hydrolase, family 47 protein	2e-9	At1g30000	glycoside hydrolase family 47 protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.50	68.0	Os08g0359300	AK099989.1	-	Esterase/lipase/thioesterase domain containingprotein	5e-6	At1g15060	-	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.36	44.0	Os04g0602900	AK065982.1	-	Farnesyl cysteine carboxyl methyltransferase-likeprotein	4e-1	At5g07890	myosin heavy chain-related	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.36	44.0	Os01g0658500	AK058491.1	-	Eukaryotic protein of unknown function DUF852family protein	1e-1	At4g19003	VPS25	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.24	22.4	Os01g0196500	NM_188246.1	-	Prenylated rab acceptor PRA1 family protein	2e+0	At1g75000	GNS1/SUR4 membrane family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.11	6.5	Os04g0212200	CB661419	-	Response regulator receiver domain containingprotein	2e-1	At4g19490	protein binding	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.9	97.8	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.4	97.7	GSM275410	Bala root tip_At the wax layer_rep3	GSE10857	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
7.2	97.4	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.8	97.0	GSM275409	Bala root tip_At the wax layer_rep2	GSE10857	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
5.8	97.0	GSM275408	Bala root tip_At the wax layer_rep1	GSE10857	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
5.7	96.9	GSM377085	Genomic DNA - 45 day old leaf sample - mutant f2045	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.6	96.9	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
5.1	96.6	GSM377071	Genomic DNA - 45 day old leaf sample - mutant d256	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.8	96.5	GSM377077	Genomic DNA - 45 day old leaf sample - mutant g6489	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.2	96.0	GSM275416	Azucena root tip_Before the wax layer_Rep3	GSE10857	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	2e-1	40	Os02g0537200	AK102851.1	-	Cyclin-like F-box domain containing protein	1e+0	At5g24770	VSP2 (VEGETATIVE STORAGE PROTEIN 2)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	2e-1	40	Os03g0854800	AK060748.1	-	Conserved hypothetical protein	1e+0	At2g43760	molybdopterin biosynthesis MoaE family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	2e-1	40	Os05g0446800	AK099450.1	-	Arginyl-tRNA--protein transferase 1 (EC 2.3.2.8)(R-transferase 1) (Arginyltransferase 1)(Arginine-tRNA--protein transferase 1). Splice isoformATE1-2	6e-18	At5g05700	ATE1 (ARGININE-TRNA PROTEIN TRANSFERASE 1)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	2e-1	40	Os10g0478200	AK104691.1	-	Cytosolic malate dehydrogenase (EC 1.1.1.37)	8e-44	At5g43330	malate dehydrogenase, cytosolic, putative	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	7e-1	38	Os01g0199900	AK068172.1	-	Phosphoribosylaminoimidazole carboxylase (EC4.1.1.21) (Fragment)	3e-13	At2g37690	phosphoribosylaminoimidazole carboxylase, putative / AIR carboxylase, putative	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	7e-1	38	Os06g0172800	CB657586	-	Seed imbibition protein (Fragment)	3e-10	At5g20250	DIN10 (DARK INDUCIBLE 10)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.15	2e-9	65	Arabidopsis thaliana	At1g30000	839879	glycoside hydrolase family 47 protein	F:mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, alpha-mannosidase activity, calcium ion binding;P:protein amino acid N-linked glycosylation;C:Golgi apparatus;MFOPB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.22	2e-18	95	Glycine max	Gma.7460.1.S1_at	BF070500	-	-	5e-21	At1g30000	glycoside hydrolase family 47 protein	C.G.	S.X.	Please select
0.66	0	1859	Hordeum vulgare	Contig10457_at	Contig10457	-	-	2e-5	At1g30000	glycoside hydrolase family 47 protein	C.G.	S.X.	Please select
0.07	1e-4	50	Populus trichocarpa	PtpAffx.116591.1.A1_at	CK096502	hypothetical protein	-	2e-9	At1g30000	glycoside hydrolase family 47 protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.33	1e-133	478	Triticum aestivum	Ta.14347.1.A1_at	BQ170205	-	-	5e-1	At1g30000	glycoside hydrolase family 47 protein	C.G.	S.X.	Please select
0.06	3e-14	79	Vitis vinifera	1618720_at	CD719639	-	-	6e-12	At1g30000	glycoside hydrolase family 47 protein	C.G.	S.X.	Please select
0.40	4e-125	448	Zea mays	Zm.5705.1.S1_at	AI637038	-	-	4e-8	At1g30000	glycoside hydrolase family 47 protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name
L	GO:0006487	The posttranslational glycosylation of protein via the N4 atom of peptidyl-asparagine or the N1' atom peptidyl-tryptophan.

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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