CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os05g0207900

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.70 88.4 Os05g0207900 AK068570.1 - Peptidase C48, SUMO/Sentrin/Ubl1 family protein 4e-10 At1g09730 Ulp1 protease family protein S.X. H.G.
0.84 96.0 Os07g0623100 AK108461.1 - ER66 protein (Fragment) 3e-6 At5g09410 EICBP.B (ETHYLENE INDUCED CALMODULIN BINDING PROTEIN) S.X. H.G.
0.71 89.6 Os04g0550400 AK067475.1 - Conserved hypothetical protein 4e-1 At2g44950 HUB1 (HISTONE MONO-UBIQUITINATION 1) S.X. H.G.
0.56 76.3 Os05g0126300 CB635555 - Conserved hypothetical protein 1e-2 At3g57740 protein kinase family protein S.X. H.G.
0.47 62.3 Os05g0144300 AK068173.1 - Type III restriction enzyme, res subunit familyprotein 2e-28 At3g06010 ATCHR12 S.X. H.G.
0.46 60.9 Os02g0114000 CB675710 - SNF2-related domain containing protein 1e+0 At4g21800 QQT2 (quatre-quart2) S.X. H.G.
0.44 58.1 Os11g0303500 AK068734.1 - Hypothetical protein 3e-1 At5g01900 WRKY62 S.X. H.G.
0.44 58.1 Os12g0102400 AK103750.1 - RNA-binding region RNP-1 (RNA recognition motif)domain containing protein 6e-16 At3g45630 RNA recognition motif (RRM)-containing protein S.X. H.G.
0.43 55.4 Os04g0440100 AK105415.1 - Nonsense-mediated decay UPF3 domain containingprotein 2e-9 At1g33980 Smg-4/UPF3 family protein S.X. H.G.
0.42 53.9 Os07g0495900 AK060293.1 - Regulator of nonsense transcripts 1 homolog 1e-6 At5g47010 LBA1 (LOW-LEVEL BETA-AMYLASE 1) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.7 96.4 GSM302923 seedling_rep2 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
4.6 96.3 GSM195223 Ovary 3, biological rep 3 GSE7951 Genome-wide gene expression profiling of rice stigma
4.5 96.3 GSM159183 Y Leaf, biological rep 1 GSE6893 Expression data for reproductive development in rice
4.5 96.3 GSM159185 Y Leaf, biological rep 3 GSE6893 Expression data for reproductive development in rice
4.4 96.2 GSM357133 14-day-old seedling, rep 2 GSE14275 Expression data for heat shock in rice seedlings
4.3 96.1 GSM195221 Ovary 1, biological rep 1 GSE7951 Genome-wide gene expression profiling of rice stigma
4.2 96.0 GSM159190 Young inflorescence (P1, upto 3 cm), biological rep 2 GSE6893 Expression data for reproductive development in rice
4.2 96.0 GSM302922 seedling_rep1 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
4.1 96.0 GSM173091 Rice OsSRT1 RNAi transgenic line LM1 GSE7197 Down-regulation of OsSRT1 induces DNA fragmentation and cell death in rice
4.1 96.0 GSM159189 Young inflorescence (P1, upto 3 cm), biological rep 1 GSE6893 Expression data for reproductive development in rice
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 2e-1 40 Os03g0370600 CA766241 - Clt1 2e-2 At3g05890 RCI2B (RARE-COLD-INDUCIBLE 2B) C.G. S.X.
0.01 7e-1 38 Os03g0340900 AB042935.1 - RSH1 6e-31 At4g02260 RSH1 (RELA-SPOT HOMOLOG 1) C.G. S.X.
0.01 7e-1 38 Os06g0473200 AK119330.1 - NPK2 2e-5 At5g40440 ATMKK3 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 3) C.G. S.X.
0.01 7e-1 38 Os11g0140400 9640.m00336 - Calcium-translocating P-type ATPase, PMCA-typefamily protein 2e-24 At3g57330 ACA11 (autoinhibited Ca2+-ATPase 11) C.G. S.X.
0.01 3e+0 36 Os02g0273800 AK071312.1 - TPR-like domain containing protein 2e-5 At2g32230 pentatricopeptide (PPR) repeat-containing protein C.G. S.X.
0.01 3e+0 36 Os04g0482000 AK064801.1 - Peptide methionine sulfoxide reductase (EC1.8.4.6) (Protein- methionine-S-oxide reductase) (PeptideMet(O) reductase) 6e-1 At5g07460 PMSR2 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 2) C.G. S.X.
0.01 3e+0 36 Os12g0541500 AK067367.1 - Elongation factor Ts (EF-Ts) 1e-10 At4g29060 emb2726 (embryo defective 2726) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 4e-10 67 Arabidopsis thaliana At1g09730 837501 Ulp1 protease family protein F:cysteine-type peptidase activity;P:proteolysis;C:cellular_component unknown;MOFPBVA - - - C.G. S.X.
0.07 8e-3 44 Glycine max Gma.7221.1.S1_at BQ628598 - - 1e-8 At1g09730 Ulp1 protease family protein C.G. S.X.
0.01 3e+0 34 Hordeum vulgare Contig8830_at Contig8830 - - 1e-1 At2g27390 proline-rich family protein C.G. S.X.
0.06 9e-12 73 Populus trichocarpa PtpAffx.201963.1.S1_at pmrna3917 hypothetical protein - 5e-44 At1g09730 Ulp1 protease family protein C.G. S.X.
0.01 6e+0 34 Triticum aestivum TaAffx.128800.1.S1_at BG313254 - - 1e-10 At1g65260 PTAC4 (PLASTID TRANSCRIPTIONALLY ACTIVE4) C.G. S.X.
0.01 4e-1 36 Vitis vinifera 1608213_at CF209965 hypothetical protein LOC100245233 - 9e-2 At2g26290 ARSK1 (root-specific kinase 1) C.G. S.X.
0.01 3e+0 34 Zea mays Zm.15352.1.A1_x_at CF627435 hypothetical protein LOC100279011 - 2e-1 At3g09590 pathogenesis-related protein, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006508 The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with the hydrolysis of peptide bonds.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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