CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os05g0200500

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.83 95.8 Os05g0200500 AK100357.1 - Serine/threonine protein kinase 3e-38 At2g25760 protein kinase family protein S.X. H.G.
0.47 62.3 Os08g0180300 AK100130.1 - SNF2-related domain containing protein 2e-12 At1g50410 SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein S.X. H.G.
0.43 55.4 Os12g0583000 AK110753.1 - - 4e-11 At2g40190 glycosyl transferase family 1 protein S.X. H.G.
0.42 53.9 Os01g0182900 AK061255.1 - Hypothetical protein 1e+1 At5g16023 RTFL18 (ROTUNDIFOLIA LIKE 18) S.X. H.G.
0.37 45.0 Os09g0566100 AK065725.1 - Protein of unknown function DUF618 domaincontaining protein 1e-1 At2g36480 zinc finger (C2H2-type) family protein S.X. H.G.
0.36 44.0 Os10g0477000 AK106419.1 - ARM repeat fold domain containing protein 1e-1 At3g04490 unknown protein S.X. H.G.
0.33 38.8 Os08g0374200 CR278593 - Conserved hypothetical protein 2e+0 At5g44130 FLA13 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 13 PRECURSOR) S.X. H.G.
0.33 38.8 Os01g0549200 AK060747.1 - ATP-binding region, ATPase-like domain containingprotein 1e-2 At4g36280 ATP-binding region, ATPase-like domain-containing protein S.X. H.G.
0.33 38.8 Os03g0853700 AK069032.1 - Conserved hypothetical protein 1e-7 At5g08550 ILP1 (increased level of polyploidy1-1D) S.X. H.G.
0.31 34.5 Os11g0139500 AK103113.1 - RNA-binding region RNP-1 (RNA recognition motif)domain containing protein 4e-2 At4g35040 bZIP transcription factor family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
8.5 97.7 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.8 97.3 GSM357136 14-day-old seedling, heat shock, rep 2 GSE14275 Expression data for heat shock in rice seedlings
6.4 97.2 GSM357137 14-day-old seedling, heat shock, rep 3 GSE14275 Expression data for heat shock in rice seedlings
6.2 97.1 GSM302922 seedling_rep1 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
6.2 97.1 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.9 97.0 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.8 97.0 GSM302923 seedling_rep2 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
5.7 96.9 GSM357135 14-day-old seedling, heat shock, rep 1 GSE14275 Expression data for heat shock in rice seedlings
5.6 96.9 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.4 96.8 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.62 2e-177 624 Os01g0198200 NM_188260.1 - Casein kinase-like protein 2e-38 At2g25760 protein kinase family protein C.G. S.X.
0.44 4e-135 484 Os01g0744300 NM_191171.1 - Casein kinase-like protein 4e-15 At2g25760 protein kinase family protein C.G. S.X.
0.21 3e-15 85 Os03g0793500 AK121620.1 - Casein kinase-like protein 4e-38 At3g03940 protein kinase family protein C.G. S.X.
0.18 2e-10 69 Os07g0171300 AK100663.1 - Protein kinase domain containing protein 4e-53 At3g03940 protein kinase family protein C.G. S.X.
0.17 5e-11 71 Os01g0772600 AK120893.1 - Casein kinase-like protein 6e-43 At3g03940 protein kinase family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.42 3e-38 161 Arabidopsis thaliana At2g25760 817118 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MBOPFVA - - - C.G. S.X.
0.22 2e-28 129 Glycine max Gma.1066.1.S1_at BG363651 - - 4e-67 At3g13670 protein kinase family protein C.G. S.X.
0.33 2e-167 589 Hordeum vulgare Contig18967_at Contig18967 - - 7e-25 At3g03940 protein kinase family protein C.G. S.X.
0.42 2e-49 198 Populus trichocarpa PtpAffx.214112.1.S1_at pmrna27471 hypothetical protein - 3e-124 At2g25760 protein kinase family protein C.G. S.X.
0.36 2e-156 553 Triticum aestivum Ta.7089.1.S1_at CD872336 casein kinase-like protein - 2e-13 At3g13670 protein kinase family protein C.G. S.X.
0.15 2e-33 143 Vitis vinifera 1610777_at CD797701 hypothetical protein LOC100263956 - 2e-42 At3g13670 protein kinase family protein C.G. S.X.
0.23 8e-133 474 Zea mays Zm.14701.1.A1_at CB334376 - - 1e-25 At3g03940 protein kinase family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006468 The process of introducing a phosphate group on to a protein.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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