CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os05g0183900

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.55 73.7 Os05g0183900 9633.m00822 - - 3e+0 At2g28500 LBD11 (LOB DOMAIN-CONTAINING PROTEIN 11) S.X. H.G.
0.67 87.2 Os03g0113600 9631.m00133 - - 2e+0 At4g26840 SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) S.X. H.G.
0.67 87.2 Os07g0122800 9635.m00218 - - 1e-1 At5g41440 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.30 32.7 Os09g0447800 9637.m02416 - - 3e-4 At1g74720 C2 domain-containing protein S.X. H.G.
0.30 32.7 Os07g0110766 NM_186178.1 - - 3e+0 At2g42130 unknown protein S.X. H.G.
0.21 17.9 Os01g0341900 9629.m02310 - - 4e-2 At4g28730 glutaredoxin family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
127.5 100.0 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
29.8 99.7 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
24.6 99.4 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
24.1 99.4 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
20.4 99.1 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.8 99.1 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.5 99.0 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.6 98.9 GSM377079 Genomic DNA - 45 day old leaf sample - mutant g6686 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.4 98.7 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.4 98.7 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.62 0 698 Os05g0184666 9633.m00828 - - 2e+0 At5g38220 hydrolase C.G. S.X.
0.21 1e-44 182 Os05g0593000 AK064253.1 - Conserved hypothetical protein 8e-4 At4g29780 unknown protein C.G. S.X.
0.20 8e-33 143 Os01g0582600 9629.m03821 - Conserved hypothetical protein 7e-5 At4g29780 unknown protein C.G. S.X.
0.11 8e-33 143 Os06g0526800 AK120510.1 - Protein phosphatase 2C family protein 7e-2 At5g24940 protein phosphatase 2C, putative / PP2C, putative C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 3e+0 34 Arabidopsis thaliana At2g28500 817398 LBD11 (LOB DOMAIN-CONTAINING PROTEIN 11) F:unknown;P:biological_process unknown;C:chloroplast;PBOMVAF - - - C.G. S.X.
0.06 5e-9 63 Glycine max GmaAffx.85640.1.S1_at AW703774 - - 1e+0 At5g57290 60S acidic ribosomal protein P3 (RPP3B) C.G. S.X.
0.13 5e-22 105 Hordeum vulgare Contig4976_at Contig4976 - - 4e+0 At5g12010 unknown protein C.G. S.X.
0.02 1e+0 36 Populus trichocarpa PtpAffx.217601.1.S1_at pmrna32935 ABC transporter family protein - 1e+1 At3g27880 unknown protein C.G. S.X.
0.35 2e-60 234 Triticum aestivum Ta.7143.2.S1_x_at CK192888 - - 2e+1 At5g19380 unknown protein C.G. S.X.
0.02 8e-1 34 Vitis vinifera 1611961_at CF516769 hypothetical protein LOC100242919 - 2e-9 At5g51620 - C.G. S.X.
0.18 4e-13 75 Zea mays Zm.11770.1.A1_at BM380607 hypothetical protein LOC100191551 - 9e-5 At5g12010 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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