CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os05g0181300

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.52 69.6 Os05g0181300 AK062607.1 - Hypothetical protein 2e-1 At4g17585 unknown protein S.X. H.G.
0.48 63.7 Os03g0107700 D64038.1 - EL2 protein 4e-1 At5g39540 - S.X. H.G.
0.44 58.1 Os01g0278000 NM_188105.1 - VQ domain containing protein 7e-4 At1g54215 proline-rich family protein S.X. H.G.
0.42 53.9 Os01g0186900 AK120573.1 - Hypothetical protein 4e-1 At3g04310 unknown protein S.X. H.G.
0.38 46.9 Os08g0293100 AK071000.1 - Conserved hypothetical protein 4e-1 At4g17585 unknown protein S.X. H.G.
0.33 38.8 Os01g0384800 AK119688.1 - Hypothetical protein 4e-1 At3g60410 unknown protein S.X. H.G.
0.32 36.3 Os06g0683400 AK111852.1 - EF-hand Ca2+-binding protein CCD1 1e+0 At5g28630 glycine-rich protein S.X. H.G.
0.29 31.1 Os05g0524100 AK067043.1 - Conserved hypothetical protein 8e+0 At5g46160 ribosomal protein L14 family protein / huellenlos paralog (HLP) S.X. H.G.
0.27 27.5 Os02g0681200 AK099314.1 - - 5e-1 At5g09960 unknown protein S.X. H.G.
0.26 25.6 Os07g0680600 AK059307.1 - Conserved hypothetical protein 5e+0 At5g18200 UTP:galactose-1-phosphate uridylyltransferase/ ribose-5-phosphate adenylyltransferase S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
22.3 99.3 GSM431934 Shoot- +Fe+P biological rep2 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
17.2 98.8 GSM431933 Shoot- +Fe+P biological rep1 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
10.8 98.1 GSM159189 Young inflorescence (P1, upto 3 cm), biological rep 1 GSE6893 Expression data for reproductive development in rice
9.6 97.9 GSM159190 Young inflorescence (P1, upto 3 cm), biological rep 2 GSE6893 Expression data for reproductive development in rice
8.9 97.8 GSM431940 Shoot- -Fe-P biological rep2 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
8.7 97.8 GSM159199 Inflorescence (P4, 10 - 15 cm), biological rep 2 GSE6893 Expression data for reproductive development in rice
8.6 97.8 GSM431939 Shoot- -Fe-P biological rep1 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
8.5 97.7 GSM159192 Inflorescence (P2, 3 - 5 cm), biological rep 1 GSE6893 Expression data for reproductive development in rice
7.7 97.6 GSM159193 Inflorescence (P2, 3 - 5 cm), biological rep 2 GSE6893 Expression data for reproductive development in rice
7.3 97.5 GSM302914 emb6D_rep1 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.28 2e-92 339 Os05g0181700 AK066089.1 - Hypothetical protein 3e+0 At4g13720 inosine triphosphate pyrophosphatase, putative / HAM1 family protein C.G. S.X.
0.06 3e-5 50 Os11g0303400 AK099876.1 - Ras small GTPase, Rho type family protein 2e-1 At4g35020 ARAC3 (ARABIDOPSIS RAC-LIKE 3) C.G. S.X.
0.03 1e-7 57 Os02g0759400 AY579411.1 - Zn-finger, RING domain containing protein 7e-2 At5g41400 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.02 3e-5 50 Os03g0712600 AK103705.1 - Hypothetical protein 5e-1 At2g36053 unknown protein C.G. S.X.
0.02 5e-4 46 Os03g0170900 D87819.1 - Sucrose transporter 5e-6 At1g22710 SUC2 (SUCROSE-PROTON SYMPORTER 2) C.G. S.X.
0.01 2e-3 44 Os02g0474300 AK122152.1 - Hypothetical protein 6e-7 At4g31210 DNA topoisomerase family protein C.G. S.X.
0.01 2e-3 44 Os05g0384800 AK069987.1 - Chromosome condensation regulator protein(Fragment) 8e-34 At5g19420 Ran GTPase binding / chromatin binding / zinc ion binding C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 2e-1 36 Arabidopsis thaliana At4g17585 827476 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P - - - C.G. S.X.
0.04 2e-2 40 Glycine max GmaAffx.70854.1.A1_at BE660972 - - 2e-2 At1g49310 unknown protein C.G. S.X.
0.05 1e-1 36 Hordeum vulgare HF11A03r_at HF11A03r - - 2e-1 At3g61980 serine protease inhibitor, Kazal-type family protein C.G. S.X.
0.04 1e+0 34 Populus trichocarpa PtpAffx.200834.1.S1_x_at pmrna1625 hypothetical protein - 2e-1 At3g44261 unknown protein C.G. S.X.
0.04 3e-1 36 Triticum aestivum TaAffx.112454.1.S1_at CA623756 - - 2e-2 At5g14040 mitochondrial phosphate transporter C.G. S.X.
0.04 1e+0 32 Vitis vinifera 1616076_s_at CF972320.1 hypothetical protein LOC100263773 - 7e-1 At2g17130 IDH2 (ISOCITRATE DEHYDROGENASE SUBUNIT 2) C.G. S.X.
0.04 4e-1 34 Zea mays Zm.9913.1.A1_at BM337435 hypothetical protein LOC100273834 - 1e+0 At3g03826 unknown protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage