CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os05g0179100

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.73 91.1 Os05g0179100 9633.m00764 - Conserved hypothetical protein 8e-5 At4g01895 systemic acquired resistance (SAR) regulator protein NIMIN-1-related S.X. H.G.
0.09 4.9 Os04g0306400 AK103443.1 - Ribose 5-phosphate isomerase family protein 4e-8 At2g01290 ribose-5-phosphate isomerase S.X. H.G.
0.03 1.4 Os02g0766700 AK072062.1 - Abscisic acid responsive elements-binding factor(ABA-responsive element binding protein 2) (AREB2) 6e-5 At2g36270 ABI5 (ABA INSENSITIVE 5) S.X. H.G.
0.03 1.4 Os01g0794100 AK062404.1 - Conserved hypothetical protein 6e+0 At4g16295 SPH1 (S-PROTEIN HOMOLOGUE 1) S.X. H.G.
0.02 1.0 Os03g0327100 AK065989.1 - NAM / CUC2-like protein 3e-19 At3g04060 anac046 (Arabidopsis NAC domain containing protein 46) S.X. H.G.
0.02 1.0 Os01g0711600 AK099559.1 - Protein of unknown function DUF778 family protein 6e-7 At2g26070 RTE1 (REVERSION-TO-ETHYLENE SENSITIVITY1) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
38.7 99.8 GSM159195 Inflorescence (P3, 5 - 10 cm), biological rep 1 GSE6893 Expression data for reproductive development in rice
21.1 99.2 GSM173091 Rice OsSRT1 RNAi transgenic line LM1 GSE7197 Down-regulation of OsSRT1 induces DNA fragmentation and cell death in rice
19.5 99.1 GSM159191 Young inflorescence (P1, upto 3 cm), biological rep 3 GSE6893 Expression data for reproductive development in rice
14.0 98.5 GSM159196 Inflorescence (P3, 5 - 10 cm), biological rep 2 GSE6893 Expression data for reproductive development in rice
13.8 98.5 GSM159197 Inflorescence (P3, 5 - 10 cm), biological rep 3 GSE6893 Expression data for reproductive development in rice
12.7 98.4 GSM173094 Rice OsSRT1 RNAi transgenic line LM3 GSE7197 Down-regulation of OsSRT1 induces DNA fragmentation and cell death in rice
10.9 98.1 GSM173093 Rice OsSRT1 RNAi transgenic line LM2 GSE7197 Down-regulation of OsSRT1 induces DNA fragmentation and cell death in rice
8.6 97.8 GSM159263 Drought stress, biological rep 2 GSE6901 Expression data for stress treatment in rice seedlings
8.5 97.7 GSM159262 Drought stress, biological rep 1 GSE6901 Expression data for stress treatment in rice seedlings
8.1 97.7 GSM159200 Inflorescence (P4, 10 - 15 cm), biological rep 3 GSE6893 Expression data for reproductive development in rice
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.09 2e-10 67 Os01g0525700 AK062691.1 - Conserved hypothetical protein 1e+0 At5g37370 ATSRL1 C.G. S.X.
0.09 4e-8 59 Os01g0178850 NM_189531.1 - - 2e+0 At3g09770 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.05 7e-7 56 Os01g0972300 AK062432.1 - Conserved hypothetical protein 1e-1 At3g62670 ARR20 (ARABIDOPSIS RESPONSE REGULATOR 20) C.G. S.X.
0.03 1e-2 42 Os08g0404500 AK103556.1 - C1-like domain containing protein 8e+0 At5g15150 ATHB-3 (ARABIDOPSIS THALIANA HOMEOBOX 3) C.G. S.X.
0.02 6e-4 46 Os05g0127200 AK064924.1 - Phosphoinositide-specific phospholipase C (PLC)family protein 8e-2 At3g47220 phosphoinositide-specific phospholipase C family protein C.G. S.X.
0.01 6e-4 46 Os03g0129200 CR290713 - Ribonuclease II domain containing protein 2e-2 At2g17510 EMB2763 (EMBRYO DEFECTIVE 2763) C.G. S.X.
0.01 3e-3 44 Os01g0356000 NM_193977.1 - ABC transporter related domain containing protein 7e-16 At2g47800 ATMRP4 (ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 4) C.G. S.X.
0.01 1e-2 42 Os04g0303500 9632.m02208 - Protein kinase domain containing protein 5e-3 At5g59000 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 8e-5 48 Arabidopsis thaliana At4g01895 827073 systemic acquired resistance (SAR) regulator protein NIMIN-1-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPVBA - - - C.G. S.X.
0.05 2e-3 44 Glycine max GmaAffx.73446.1.S1_at BI975017 - - 3e+0 At5g05910 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.07 2e-3 42 Hordeum vulgare HF21N04r_at HF21N04r - - 2e+0 At4g19150 ankyrin repeat family protein C.G. S.X.
0.06 5e-4 46 Populus trichocarpa PtpAffx.224051.1.S1_x_at pmrna42286 hypothetical protein - 6e-1 At3g46900 COPT2 C.G. S.X.
0.12 1e-22 107 Triticum aestivum TaAffx.78553.1.S1_at BQ802941 - - 1e+0 At4g13395 RTFL12 (ROTUNDIFOLIA LIKE 12) C.G. S.X.
0.05 6e-3 40 Vitis vinifera 1614975_at CD799759 hypothetical protein LOC100264828 - 2e-1 At5g14440 - C.G. S.X.
0.03 5e-1 34 Zea mays ZmAffx.882.1.A1_at AI770805 - - 3e+0 At1g18970 GLP4 (GERMIN-LIKE PROTEIN 4) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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