CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os05g0163000

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.61 81.2 Os05g0163000 AK066161.1 - Arginyl-tRNA synthetase, class Ic family protein 2e-20 At4g26300 emb1027 (embryo defective 1027) S.X. H.G.
0.67 87.2 Os03g0786800 AK059186.1 - The start codon is not identified. 4e-54 At5g46210 CUL4 (CULLIN4) S.X. H.G.
0.46 60.9 Os04g0195000 AK073992.1 - Vacuolar assembly protein VPS41 homolog 2e-24 At1g08190 vacuolar assembly protein, putative (VPS41) S.X. H.G.
0.46 60.9 Os01g0585700 NM_192531.1 - SIT4 phosphatase-associated protein family protein 2e-17 At1g30470 SIT4 phosphatase-associated family protein S.X. H.G.
0.44 58.1 Os09g0281600 AK067020.1 - SWAP/Surp domain containing protein 6e-12 At3g52120 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein S.X. H.G.
0.35 41.7 Os11g0661400 AK063910.1 - AAA ATPase, central region domain containingprotein 9e-37 At1g02890 AAA-type ATPase family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
3.9 95.8 GSM275416 Azucena root tip_Before the wax layer_Rep3 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
3.3 95.1 GSM195224 Suspension cell GSE7951 Genome-wide gene expression profiling of rice stigma
3.1 94.8 GSM357137 14-day-old seedling, heat shock, rep 3 GSE14275 Expression data for heat shock in rice seedlings
3.1 94.8 GSM275414 Azucena root tip_Before the wax layer_rep1 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
3.0 94.6 GSM357133 14-day-old seedling, rep 2 GSE14275 Expression data for heat shock in rice seedlings
3.0 94.6 GSM159186 SAM, biological rep 1 GSE6893 Expression data for reproductive development in rice
3.0 94.6 GSM357136 14-day-old seedling, heat shock, rep 2 GSE14275 Expression data for heat shock in rice seedlings
2.9 94.5 GSM275405 Azucena root tip_At the wax layer_rep1 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
2.8 94.3 GSM357135 14-day-old seedling, heat shock, rep 1 GSE14275 Expression data for heat shock in rice seedlings
2.7 94.1 GSM275408 Bala root tip_At the wax layer_rep1 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.53 3e-83 311 Os01g0158500 NM_184454.1 - Arginyl-tRNA synthetase, class Ic family protein 7e-17 At4g26300 emb1027 (embryo defective 1027) C.G. S.X.
0.01 4e-2 42 Os09g0531800 AK119405.1 - Glycosyl transferase, family 8 protein 1e-31 At3g61130 GAUT1 (GALACTURONOSYLTRANSFERASE 1) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.20 2e-20 101 Arabidopsis thaliana At4g26300 828736 emb1027 (embryo defective 1027) F:nucleotide binding, aminoacyl-tRNA ligase activity, arginine-tRNA ligase activity, ATP binding;P:embryonic development ending in seed dormancy, arginyl-tRNA aminoacylation;C:mitochondrion, chloroplast;OBMAFPV - - - C.G. S.X.
0.10 1e-10 69 Glycine max Gma.10893.1.S1_at BE659457 arginyl-tRNA synthetase - 7e-20 At4g26300 emb1027 (embryo defective 1027) C.G. S.X.
0.55 0 1055 Hordeum vulgare Contig9377_at Contig9377 - - 4e-27 At4g26300 emb1027 (embryo defective 1027) C.G. S.X.
0.14 3e-8 61 Populus trichocarpa Ptp.1743.1.A1_a_at CV271562 hypothetical protein - 3e-45 At4g26300 emb1027 (embryo defective 1027) C.G. S.X.
0.65 0 1072 Triticum aestivum Ta.2176.1.S1_at CK206562 - - 1e-25 At4g26300 emb1027 (embryo defective 1027) C.G. S.X.
0.01 1e+0 34 Vitis vinifera 1617003_at CF205278.1 - - 2e-2 At1g69760 unknown protein C.G. S.X.
0.37 5e-149 527 Zea mays Zm.7543.1.A1_at CD997722 hypothetical protein LOC100192002 - 4e-6 At1g66530 arginyl-tRNA synthetase, putative / arginine--tRNA ligase, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006418 The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, to be used in ribosome-mediated polypeptide synthesis.
L GO:0006420 The process of coupling arginine to arginyl-tRNA, catalyzed by arginyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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