CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os05g0162000

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.89 96.9 Os05g0162000 AK067416.1 - Peroxidase 1 3e-3 At5g17820 peroxidase 57 (PER57) (P57) (PRXR10) S.X. H.G.
0.60 79.7 Os02g0157600 9630.m00558 - Rhodanese-like domain containing protein 6e+0 At5g66190 FNR1 (FERREDOXIN-NADP(+)-OXIDOREDUCTASE 1) S.X. H.G.
0.60 79.7 Os08g0477500 AU033142 - S.tuberosum patatin (Fragment) 2e+0 At1g28280 VQ motif-containing protein S.X. H.G.
0.56 76.3 Os07g0645300 AK108931.1 - Protein of unknown function DUF679 family protein 2e+0 At2g21660 CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2) S.X. H.G.
0.55 73.7 Os07g0630400 AK060320.1 - Ribonuclease T2 family protein 2e+0 At3g22580 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein S.X. H.G.
0.52 69.6 Os09g0280500 AK106988.1 - Basic-leucine zipper (bZIP) transcription factordomain containing protein 7e-2 At3g12250 TGA6 (TGACG MOTIF-BINDING FACTOR 6) S.X. H.G.
0.51 68.7 Os02g0512000 AK108786.1 - Auxin responsive SAUR protein family protein 2e-1 At5g33390 glycine-rich protein S.X. H.G.
0.50 68.0 Os02g0572600 AK102182.1 - - 1e-2 At5g23120 HCF136 S.X. H.G.
0.50 68.0 Os01g0652300 AK063136.1 - Hypothetical protein 5e+0 At1g30475 - S.X. H.G.
0.48 63.7 Os03g0320100 CF280794 - Alpha-L-arabinofuranosidase, C-terminal domaincontaining protein 1e-15 At3g10740 ASD1 (ALPHA-L-ARABINOFURANOSIDASE 1) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
28.9 99.6 GSM149411 Rice Bala 0ppm Arsenate (Control) Rep3 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
26.4 99.5 GSM359910 IR29 root, salt-treated, biological replicate 1 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
26.0 99.5 GSM359912 IR29 root, salt-treated, biological replicate 3 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
25.5 99.5 GSM359911 IR29 root, salt-treated, biological replicate 2 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
18.2 98.9 GSM359918 IR63731 root, salt-treated, biological replicate 3 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
16.2 98.8 GSM100443 Rice Bala 0ppm Arsenate (Control) Rep1 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
13.5 98.5 GSM431926 Root- +Fe+P biological rep2 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
13.1 98.4 GSM359916 IR63731 root, salt-treated, biological replicate 1 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
11.9 98.3 GSM100439 Rice Azucena 0ppm Arsenate (Control) Rep1 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
11.9 98.3 GSM431925 Root- +Fe+P biological rep1 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.21 8e-30 133 Os01g0327400 AK099241.1 - Peroxidase 1 7e-1 At5g06720 peroxidase, putative C.G. S.X.
0.20 1e-19 99 Os01g0327100 AK070715.1 - Haem peroxidase, plant/fungal/bacterial familyprotein 5e-2 At1g44970 peroxidase, putative C.G. S.X.
0.17 3e-20 101 Os01g0326000 AK061371.1 - Peroxidase 1 2e-1 At1g44970 peroxidase, putative C.G. S.X.
0.17 2e-18 95 Os05g0135200 9633.m00374 - Haem peroxidase, plant/fungal/bacterial familyprotein 8e-3 At5g15180 peroxidase, putative C.G. S.X.
0.14 4e-16 87 Os01g0327000 NM_183815.1 - Conserved hypothetical protein 7e-7 At1g14540 anionic peroxidase, putative C.G. S.X.
0.14 2e-15 85 Os01g0293400 9629.m01841 - - 6e-4 At5g51890 peroxidase C.G. S.X.
0.13 1e-22 109 Os03g0369000 AK064619.1 - Peroxidase 1e-2 At4g33420 peroxidase, putative C.G. S.X.
0.08 2e-15 85 Os07g0639400 AK110555.1 - Peroxidase 1 7e-4 At4g36430 peroxidase, putative C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 3e-3 44 Arabidopsis thaliana At5g17820 831650 peroxidase 57 (PER57) (P57) (PRXR10) F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:cell wall, membrane, plant-type cell wall;PFOM - - - C.G. S.X.
0.02 3e-1 38 Glycine max PsAffx.CL1478Contig1_at PsAffx.CL1478Contig1 - - 2e-1 At4g21610 LOL2 (LSD ONE LIKE 2) C.G. S.X.
0.15 2e-11 69 Hordeum vulgare Contig14609_at Contig14609 - - 7e-7 At3g01190 peroxidase 27 (PER27) (P27) (PRXR7) C.G. S.X.
0.02 4e-3 44 Populus trichocarpa PtpAffx.163434.1.S1_at CX175945 hypothetical protein - 5e-3 At2g33510 protein binding C.G. S.X.
0.15 2e-19 97 Triticum aestivum Ta.14010.1.S1_at CA644569 - - 1e-2 At4g26010 peroxidase, putative C.G. S.X.
0.03 3e-3 42 Vitis vinifera 1610628_at CF213924 hypothetical protein LOC100267732 - 2e-5 At5g42180 peroxidase 64 (PER64) (P64) (PRXR4) C.G. S.X.
0.41 9e-45 180 Zea mays Zm.11214.1.S1_at AY107230.1 hypothetical protein LOC100273479 - 7e-4 At3g21770 peroxidase 30 (PER30) (P30) (PRXR9) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006979 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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