CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os05g0155100

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.84 96.0 Os05g0155100 AK120877.1 - 60S ribosomal protein L18 5e-4 At2g47570 60S ribosomal protein L18 (RPL18A) S.X. H.G.
0.85 96.1 Os02g0105900 AK102423.1 - 40S ribosomal protein S4 4e-125 At5g58420 40S ribosomal protein S4 (RPS4D) S.X. H.G.
0.83 95.8 Os03g0807800 AK064984.1 - 40S ribosomal protein S2 2e-16 At3g57490 40S ribosomal protein S2 (RPS2D) S.X. H.G.
0.81 94.8 Os02g0814700 AK121994.1 - 60S ribosomal protein L17 [Oryza sativa (japonicacultivar-group)] 4e-78 At1g04480 60S ribosomal protein L23 (RPL23A) S.X. H.G.
0.77 93.1 Os11g0168200 AK073392.1 - 60S ribosomal protein L3 4e-95 At1g43170 ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1) S.X. H.G.
0.76 92.2 Os02g0591700 AK072777.1 - Ribosomal protein L6 (Fragment) 9e-6 At1g74060 60S ribosomal protein L6 (RPL6B) S.X. H.G.
0.76 92.2 Os12g0167900 D12630.1 - 60S ribosomal protein L3 1e-116 At1g43170 ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1) S.X. H.G.
0.76 92.2 Os11g0127900 L36313.1 - 40S ribosomal protein S16 2e-9 At3g04230 40S ribosomal protein S16 (RPS16B) S.X. H.G.
0.75 91.9 Os07g0150200 AK121635.1 - 40S ribosomal protein S12 5e-19 At2g32060 40S ribosomal protein S12 (RPS12C) S.X. H.G.
0.73 91.1 Os03g0343500 AB117995.1 - 60S ribosomal protein L22-2 2e-24 At3g05560 60S ribosomal protein L22-2 (RPL22B) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.0 95.9 GSM275414 Azucena root tip_Before the wax layer_rep1 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
4.0 95.9 GSM275407 Azucena root tip_At the wax layer_rep3 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
3.9 95.8 GSM275405 Azucena root tip_At the wax layer_rep1 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
3.7 95.6 GSM275406 Azucena root tip_At the wax layer_rep2 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
3.4 95.2 GSM275411 Azucena root tip_Buckled at the wax layer_rep1 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
3.3 95.1 GSM99862 TCHW P5_m103 salt stress, biological rep2 GSE4438 Expression data from rice under salinity stress
3.1 94.8 GSM275413 Azucena root tip_Buckled at the wax layer_rep3 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
3.1 94.8 GSM275416 Azucena root tip_Before the wax layer_Rep3 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
3.0 94.6 GSM99863 TCHW P6_m103 salt stress, biological rep3 GSE4438 Expression data from rice under salinity stress
2.9 94.5 GSM99861 TCHW P4_m103 salt stress, biological rep1 GSE4438 Expression data from rice under salinity stress
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.50 7e-88 325 Os03g0341100 AK121580.1 - 60S ribosomal protein L18 2e-12 At5g27850 60S ribosomal protein L18 (RPL18C) C.G. S.X.
0.45 1e-64 248 Os07g0674700 AK066329.1 - 60S ribosomal protein L18 7e-3 At3g05590 RPL18 (RIBOSOMAL PROTEIN L18) C.G. S.X.
0.03 2e-1 38 Os06g0294500 9634.m01837 - - 3e+0 At5g55410 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein C.G. S.X.
0.01 1e+0 36 Os06g0103600 AK072800.1 - Aminoacyl-t-RNA synthetase precursor 8e-46 At3g48110 EDD1 (EMBRYO-DEFECTIVE-DEVELOPMENT 1) C.G. S.X.
0.01 1e+0 36 Os07g0668100 AK106702.1 - Hypothetical protein 3e-1 At1g30473 metal ion binding C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.26 5e-4 46 Arabidopsis thaliana At2g47570 819370 60S ribosomal protein L18 (RPL18A) F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, large ribosomal subunit;MOFPA - - - C.G. S.X.
0.30 8e-13 75 Glycine max GmaAffx.91512.1.S1_s_at CF807237 - - 2e-21 At5g27850 60S ribosomal protein L18 (RPL18C) C.G. S.X.
0.58 0 658 Hordeum vulgare Contig2634_at Contig2634 - - 3e-8 At5g27850 60S ribosomal protein L18 (RPL18C) C.G. S.X.
0.29 2e-23 111 Populus trichocarpa PtpAffx.134057.1.A1_s_at CV265604 hypothetical protein - 3e-33 At3g05590 RPL18 (RIBOSOMAL PROTEIN L18) C.G. S.X.
0.51 3e-178 624 Triticum aestivum Ta.23431.1.S1_at BJ283471 Ribosomal protein L18 - 1e-8 At3g05590 RPL18 (RIBOSOMAL PROTEIN L18) C.G. S.X.
0.34 1e-29 129 Vitis vinifera 1609369_at CB973641 hypothetical protein LOC100250430 - 4e-20 At5g27850 60S ribosomal protein L18 (RPL18C) C.G. S.X.
0.57 0 636 Zea mays Zm.7082.2.S1_a_at CO523732 hypothetical protein LOC100194344 - 1e-23 At3g05590 RPL18 (RIBOSOMAL PROTEIN L18) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006412 The cellular metabolic process by which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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