CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os05g0143800

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.83 95.8 Os05g0143800 AK106538.1 - GH3 auxin-responsive promoter family protein 1e+0 At2g46505 SDH4 S.X. H.G.
0.91 98.9 Os08g0130000 9636.m00276 - Conserved hypothetical protein 1e-11 At2g04305 magnesium transporter CorA-like protein-related S.X. H.G.
0.77 93.1 Os04g0534200 AK109583.1 - Receptor kinase-like protein 8e-4 At5g41180 leucine-rich repeat protein kinase, putative S.X. H.G.
0.67 87.2 Os05g0148900 AK120912.1 - Glutathione-S-transferase 19E50 1e+0 At1g03860 ATPHB2 (PROHIBITIN 2) S.X. H.G.
0.67 87.2 Os02g0448000 9630.m02338 - Protein of unknown function DUF296 domaincontaining protein 8e-6 At4g22810 DNA-binding protein-related S.X. H.G.
0.32 36.3 Os12g0640700 AK108649.1 - N/apple PAN domain containing protein 8e-1 At5g44500 small nuclear ribonucleoprotein associated protein B, putative / snRNP-B, putative / Sm protein B, putative S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
18.1 98.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
13.9 98.5 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.3 98.1 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.3 97.9 GSM100439 Rice Azucena 0ppm Arsenate (Control) Rep1 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
9.1 97.9 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.6 97.8 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.5 97.7 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.5 97.7 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.5 97.7 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.4 97.7 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 9e-3 44 Os01g0730000 9629.m05148 - - 2e-1 At3g15190 chloroplast 30S ribosomal protein S20, putative C.G. S.X.
0.02 9e-3 44 Os06g0700300 AK099967.1 - Hypothetical protein 7e+0 At5g62770 unknown protein C.G. S.X.
0.01 4e-5 52 Os11g0569600 AK111589.1 - Protein kinase domain containing protein 1e-1 At5g39390 leucine-rich repeat family protein / protein kinase family protein C.G. S.X.
0.01 2e-3 46 Os03g0861900 AK066683.1 - TPR-like domain containing protein 4e-1 At3g58630 transcription factor C.G. S.X.
0.01 9e-3 44 Os03g0793700 AY098743.2 - Globulin 2 (Fragment) 4e+0 At4g36990 HSF4 (HEAT SHOCK FACTOR 4) C.G. S.X.
0.01 9e-3 44 Os12g0178100 AK061107.1 - Thylakoid-bound ascorbate peroxidase (EC1.11.1.11) (Fragment) 4e-27 At4g08390 SAPX (STROMAL ASCORBATE PEROXIDASE) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 1e+0 36 Arabidopsis thaliana At2g46505 819261 SDH4 Encodes succinate dehydrogenase ,a component of mitochondrial respiratory complex II. Nuclear encoded gene which is imported into the mitochondrion. - - - C.G. S.X.
0.02 4e-1 38 Glycine max GmaAffx.30735.1.S1_at BE209525 - - 2e+0 At5g59616 protein kinase-related C.G. S.X.
0.02 1e-1 38 Hordeum vulgare Contig20752_at Contig20752 - - 8e-1 At1g15580 IAA5 (INDOLE-3-ACETIC ACID INDUCIBLE 5) C.G. S.X.
0.01 4e-1 38 Populus trichocarpa PtpAffx.161323.1.S1_a_at CX186124 hypothetical protein - 1e-53 At4g31750 WIN2 (HOPW1-1-INTERACTING 2) C.G. S.X.
0.02 7e-2 40 Triticum aestivum TaAffx.84898.1.S1_at CA627399 - - 4e+0 At2g30360 SIP4 (SOS3-INTERACTING PROTEIN 4) C.G. S.X.
0.01 1e+0 34 Vitis vinifera 1618781_at CB922984 hypothetical protein LOC100260972 - 1e+0 At1g65032 unknown protein C.G. S.X.
0.02 1e-1 38 Zea mays Zm.2322.1.A1_at AW352493 hypothetical protein LOC100272973 /// hypothetical protein LOC100273202 - 4e-6 At2g35780 scpl26 (serine carboxypeptidase-like 26) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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