CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os05g0141700

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.50 68.0 Os05g0141700 AK065644.1 - Phosphoglycerate/bisphosphoglycerate mutase familyprotein 4e-8 At3g05170 phosphoglycerate/bisphosphoglycerate mutase family protein S.X. H.G.
0.55 73.7 Os07g0164800 AK070973.1 - Hypothetical protein 2e-1 At1g22230 unknown protein S.X. H.G.
0.15 10.3 Os04g0550200 AK108473.1 - Pathogenesis-related transcriptional factor andERF domain containing protein 2e-6 At2g35700 ERF38 (ERF FAMILY PROTEIN 38) S.X. H.G.
0.13 8.2 Os01g0600500 BX927920 - HAD-superfamily subfamily IB hydrolase,hypothetical 1 protein 2e-3 At1g73010 phosphatase S.X. H.G.
0.04 2.0 Os02g0789600 AK112100.1 - Quinonprotein alcohol dehydrogenase-like domaincontaining protein 2e-8 At3g19240 - S.X. H.G.
0.04 2.0 Os03g0199100 AK069890.1 - Protein of unknown function DUF677 family protein 3e-1 At2g36100 integral membrane family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
18.9 99.0 GSM159198 Inflorescence (P4, 10 - 15 cm), biological rep 1 GSE6893 Expression data for reproductive development in rice
17.3 98.9 GSM159199 Inflorescence (P4, 10 - 15 cm), biological rep 2 GSE6893 Expression data for reproductive development in rice
17.2 98.8 GSM159200 Inflorescence (P4, 10 - 15 cm), biological rep 3 GSE6893 Expression data for reproductive development in rice
16.2 98.8 GSM375775 slr1 (k1001)_ shoot_replicate 2 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
15.0 98.6 GSM375773 slr1 (k1001)_ shoot_replicate 1 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
13.7 98.5 GSM375777 slr1 (k1001)_ shoot_replicate 3 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
12.7 98.4 GSM159173 Rice coleoptiles, 4 days old, aerobic, replicate N.2 (sample#10) GSE6908 Transcript Profiling of the Aerobic and Anoxic Rice Coleoptile
11.1 98.2 GSM159172 Rice coleoptiles, 4 days old, aerobic, replicate N.1 (sample#9) GSE6908 Transcript Profiling of the Aerobic and Anoxic Rice Coleoptile
9.7 98.0 GSM375770 gid2-1_ shoot_replicate 2 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
8.7 97.8 GSM375769 gid2-1_ shoot_replicate 1 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.16 1e-6 56 Os06g0109000 AK069941.1 - Phosphoglycerate/bisphosphoglycerate mutase familyprotein 2e-1 At1g35430 unknown protein C.G. S.X.
0.02 8e-5 50 Os04g0556900 AK064112.1 - Conserved hypothetical protein 3e-2 At1g54215 proline-rich family protein C.G. S.X.
0.02 5e-3 44 Os01g0607100 9629.m04043 - - 3e-1 At2g36100 integral membrane family protein C.G. S.X.
0.02 5e-3 44 Os05g0553800 AK103746.1 - Anti-silencing protein-like (Anti-silencingfunction 1b) (Anti- silencing factor 1-like protein) 7e-13 At5g38110 ASF1B (ANTI- SILENCING FUNCTION 1B) C.G. S.X.
0.02 5e-3 44 Os06g0714600 AU223447 - Ras GTPase family protein 1e-2 At3g46830 ATRABA2C (ARABIDOPSIS RAB GTPASE HOMOLOG A2C) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.09 4e-8 59 Arabidopsis thaliana At3g05170 819681 phosphoglycerate/bisphosphoglycerate mutase family protein F:catalytic activity;P:metabolic process;C:cellular_component unknown;BFOPMA - - - C.G. S.X.
0.03 6e-8 59 Glycine max PsAffx.C106000023_at PsAffx.C106000023 - - 1e+0 At3g14760 unknown protein C.G. S.X.
0.09 2e-27 123 Hordeum vulgare Contig13189_at Contig13189 - - 7e-5 At5g67640 unknown protein C.G. S.X.
0.03 3e-3 44 Populus trichocarpa PtpAffx.222762.1.S1_at pmrna40401 hypothetical protein - 4e-7 At3g05170 phosphoglycerate/bisphosphoglycerate mutase family protein C.G. S.X.
0.17 8e-59 228 Triticum aestivum Ta.25476.1.S1_at CD454009 - - 4e-4 At5g67640 unknown protein C.G. S.X.
0.03 2e-1 36 Vitis vinifera 1617671_s_at AY395744.1 hypothetical protein LOC100248784 - 2e-5 At3g15210 ERF4 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 4) C.G. S.X.
0.52 0 716 Zea mays Zm.13814.1.S1_at AY104654.1 hypothetical protein LOC100273186 - 1e-5 At1g08940 phosphoglycerate/bisphosphoglycerate mutase family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0008152 The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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