CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os05g0140800

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.9 Os05g0140800 AK110652.1 - Glucose/ribitol dehydrogenase family protein 7e-1 At3g05260 short-chain dehydrogenase/reductase (SDR) family protein S.X. H.G.
0.80 94.6 Os05g0569500 AF049892.1 - - 6e-10 At1g05510 - S.X. H.G.
0.77 93.1 Os06g0324400 AK063726.1 - Late embryogenesis abundant (LEA) group 1 familyprotein 1e+0 At5g49600 unknown protein S.X. H.G.
0.77 93.1 Os03g0277500 AK063650.1 - Glyoxalase/bleomycin resistanceprotein/dioxygenase domain containing protein 2e+1 At4g38260 unknown protein S.X. H.G.
0.73 91.1 Os04g0510900 AK063625.1 - Embryo-specific protein 1 (ATS1) 9e+0 At1g23240 caleosin-related family protein S.X. H.G.
0.61 81.2 Os03g0159600 AK106743.1 - Rab28 protein 1e+1 At3g14200 DNAJ heat shock N-terminal domain-containing protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
69.2 99.9 GSM159220 Seed (S5, 21 - 29 dap), biological rep 2 GSE6893 Expression data for reproductive development in rice
57.9 99.9 GSM159218 Seed (S4, 11 - 20 dap), biological rep 3 GSE6893 Expression data for reproductive development in rice
51.0 99.9 GSM159219 Seed (S5, 21 - 29 dap), biological rep 1 GSE6893 Expression data for reproductive development in rice
48.6 99.9 GSM159216 Seed (S4, 11 - 20 dap), biological rep 1 GSE6893 Expression data for reproductive development in rice
43.2 99.9 GSM159217 Seed (S4, 11 - 20 dap), biological rep 2 GSE6893 Expression data for reproductive development in rice
41.5 99.9 GSM195228 Embryo GSE7951 Genome-wide gene expression profiling of rice stigma
39.9 99.9 GSM159221 Seed (S5, 21 - 29 dap), biological rep 3 GSE6893 Expression data for reproductive development in rice
26.9 99.6 GSM302914 emb6D_rep1 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
24.7 99.4 GSM302915 emb6D_rep2 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
8.2 97.7 GSM159215 Seed (S3, 5 - 10 dap), biological rep 3 GSE6893 Expression data for reproductive development in rice
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 9e-5 50 Os06g0205100 AK062487.1 - P-type R2R3 Myb protein (Fragment) 1e+0 At1g03730 unknown protein C.G. S.X.
0.03 1e-3 46 Os09g0446900 9637.m02407 - - 4e+0 At5g62998 unknown protein C.G. S.X.
0.02 2e-5 52 Os02g0198800 AK105560.1 - Plant protein of unknown function DUF868 familyprotein 2e-1 At3g13229 unknown protein C.G. S.X.
0.02 9e-5 50 Os05g0567200 9633.m04611 - - 6e-8 At1g62300 WRKY6 C.G. S.X.
0.02 4e-4 48 Os11g0139400 AK107562.1 - Conserved hypothetical protein 9e-13 At4g32390 phosphate translocator-related C.G. S.X.
0.02 4e-4 48 Os11g0528500 AK058434.1 - Rubredoxin-type Fe(Cys)4 protein family protein 2e+0 At3g21860 ASK10 (ARABIDOPSIS SKP1-LIKE 10) C.G. S.X.
0.01 4e-4 48 Os02g0554300 AK101886.1 - Synaptojanin, N-terminal domain containing protein 5e-9 At3g51460 RHD4 (ROOT HAIR DEFECTIVE4) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 7e-1 36 Arabidopsis thaliana At3g05260 819690 short-chain dehydrogenase/reductase (SDR) family protein F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAV - - - C.G. S.X.
0.05 2e-2 42 Glycine max Gma.2253.1.S1_at AF169018.1 seed maturation protein PM34 - 5e-26 At1g54870 binding / catalytic/ oxidoreductase C.G. S.X.
0.53 9e-116 416 Hordeum vulgare Contig2483_at Contig2483 - - 1e-2 At1g54870 binding / catalytic/ oxidoreductase C.G. S.X.
0.03 6e-2 40 Populus trichocarpa PtpAffx.221115.1.S1_at pmrna37717 hypothetical protein - 2e-1 At2g45530 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.49 6e-91 335 Triticum aestivum Ta.20583.2.S1_a_at CD910001 - - 1e-2 At1g54870 binding / catalytic/ oxidoreductase C.G. S.X.
0.02 1e-2 40 Vitis vinifera 1606949_at CF568963 - - 6e-2 At1g11560 OST3/OST6 family protein C.G. S.X.
0.45 1e-77 289 Zea mays Zm.13796.1.S1_at AY104946.1 hypothetical protein LOC100272498 - 1e+1 At5g50650 WD-40 repeat family protein / St12p protein, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0008152 The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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