CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os05g0129800

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.53 71.3 Os05g0129800 9633.m00316 - DNA-binding WRKY domain containing protein 5e-10 At4g24240 WRKY7 S.X. H.G.
0.73 91.1 Os04g0295500 AK065384.1 - Conserved hypothetical protein 4e-1 At1g65040 protein binding / zinc ion binding S.X. H.G.
0.60 79.7 Os07g0619400 AK062716.1 - Calcium-binding EF-hand domain containing protein 9e-2 At1g17880 nascent polypeptide-associated complex (NAC) domain-containing protein / BTF3b-like transcription factor, putative S.X. H.G.
0.50 68.0 Os02g0178000 AK111625.1 - SNF1 related protein kinase-like protein 6e-11 At1g01140 CIPK9 (CBL-INTERACTING PROTEIN KINASE 9) S.X. H.G.
0.40 51.1 Os08g0113500 AK071052.1 - No apical meristem (NAM) protein family protein 1e-3 At2g02450 ANAC035 (Arabidopsis NAC domain containing protein 35) S.X. H.G.
0.26 25.6 Os10g0556200 CB624216 - SPATULA 8e-3 At4g00050 UNE10 (unfertilized embryo sac 10) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
12.8 98.4 GSM154945 Leaf_DMSO-treatment_30min_replicate 1 GSE6719 Cytokinin responsive genes in rice
12.5 98.3 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.4 98.3 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.1 98.3 GSM154953 Leaf_DMSO-treatment_120min_replicate 3 GSE6719 Cytokinin responsive genes in rice
11.6 98.2 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.4 98.2 GSM154946 Leaf_DMSO-treatment_30min_replicate 2 GSE6719 Cytokinin responsive genes in rice
10.7 98.1 GSM154947 Leaf_DMSO-treatment_30min_replicate 3 GSE6719 Cytokinin responsive genes in rice
10.5 98.1 GSM154952 Leaf_DMSO-treatment_120min_replicate 2 GSE6719 Cytokinin responsive genes in rice
10.0 98.0 GSM154951 Leaf_DMSO-treatment_120min_replicate 1 GSE6719 Cytokinin responsive genes in rice
8.3 97.7 GSM174885 B FR13 3 dpi rep 1 with array type rice from Affymetrix GSE7256 Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 3e-16 87 Os03g0798500 9631.m05743 - WRKY transcription factor 6 2e-6 At2g24570 WRKY17 C.G. S.X.
0.04 6e-2 40 Os02g0462800 AK110587.1 - WRKY transcription factor 42 (Transcription factorWRKY02) 3e-2 At4g24240 WRKY7 C.G. S.X.
0.04 2e-1 38 Os10g0579400 AK108346.1 - The start codon is not identified. 2e-9 At1g30650 WRKY14 C.G. S.X.
0.03 4e-3 44 Os04g0597300 AK110912.1 - DNA-binding WRKY domain containing protein 3e-25 At2g34830 WRKY35 (WRKY DNA-binding protein 35) C.G. S.X.
0.03 2e-1 38 Os12g0597700 AK070648.1 - Probable WRKY transcription factor 15 (WRKYDNA-binding protein 15) 4e-28 At5g28650 WRKY74 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 5e-10 65 Arabidopsis thaliana At4g24240 828525 WRKY7 Encodes a Ca-dependent calmodulin binding protein. Sequence similarity to the WRKY transcription factor gene family. - - - C.G. S.X.
0.10 7e-13 75 Glycine max Gma.16679.1.S1_at BM520158 WRKY8 protein - 2e-9 At1g30650 WRKY14 C.G. S.X.
0.09 9e-7 54 Hordeum vulgare Contig22226_at Contig22226 - - 6e-6 At3g04670 WRKY39 C.G. S.X.
0.16 1e-14 81 Populus trichocarpa PtpAffx.11077.2.S1_at CV273285 hypothetical protein - 4e-1 At4g01250 WRKY22 C.G. S.X.
0.03 1e-1 38 Triticum aestivum TaAffx.86717.1.S1_at CA602133 WRKY16 transcription factor - 7e-2 At3g04670 WRKY39 C.G. S.X.
0.08 1e-7 56 Vitis vinifera 1619424_at BQ800205 hypothetical protein LOC100267695 - 5e-9 At4g23550 WRKY29 C.G. S.X.
0.10 1e-11 69 Zea mays Zm.9098.1.A1_a_at BM336161 Hypothetical protein LOC100192894 - 6e-6 At4g31550 WRKY11 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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