Gene omics information

Query gene ID Os05g0125500
Gene name
Organism Oryza sativa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.6787.2Os05g0125500CB660386-Isovaleryl-CoA dehydrogenase, mitochondrialprecursor (EC 1.3.99.10) (IVD)1e-26At3g45300IVD (ISOVALERYL-COA-DEHYDROGENASE)S.X.H.G.
0.4458.1Os08g0424200AK060716.1-Methylcrotonyl-CoA carboxylase beta chain,mitochondrial precursor (EC 6.4.1.4)(3-Methylcrotonyl-CoA carboxylase 2) (MCCase betasubunit) (3-methylcrotonyl-CoA:carbon dioxide ligase betasubunit)2e-26At4g34030MCCB (3-METHYLCROTONYL-COA CARBOXYLASE)S.X.H.G.
0.4355.4Os12g0605800AK121511.1-Methylcrotonyl-CoA carboxylase alpha chain,mitochondrial precursor (EC 6.4.1.4)(3-Methylcrotonyl-CoA carboxylase 1) (MCCase alphasubunit) (3-methylcrotonyl-CoA:carbon dioxide ligasealpha subunit)2e-15At1g03090MCCAS.X.H.G.
0.4051.1Os01g0110400AK103194.1-Acetoacetyl-coenzyme A thiolase (EC 2.3.1.9)9e-10At5g47720acetyl-CoA C-acyltransferase, putative / 3-ketoacyl-CoA thiolase, putativeS.X.H.G.
0.4051.1Os10g0516300CB620164-Electron transfer flavoprotein-ubiquinoneoxidoreductase, mitochondrial precursor (EC 1.5.5.1)(ETF-QO) (ETF-ubiquinone oxidoreductase) (ETFdehydrogenase) (Electron-transferring- flavoproteindehydrogenase). Splice isoform 28e-17At2g43400ETFQO (electron-transfer flavoprotein:ubiquinone oxidoreductase)S.X.H.G.
0.1813.7Os07g0170100AK105761.1-Branched-chain alpha-keto acid decarboxylase E1beta subunit (EC 1.2.4.4)3e-55At1g55510BCDH BETA1 (BRANCHED-CHAIN ALPHA-KETO ACID DECARBOXYLASE E1 BETA SUBUNIT)S.X.H.G.
0.1712.6Os09g0440300AK109168.1-Aldehyde dehydrogenase family 7 member A1 (EC1.2.1.3) (Antiquitin 1) (Matured fruit 60 kDa protein)(MF-60)1e+0At2g01080-S.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
11.598.2GSM173091Rice OsSRT1 RNAi transgenic line LM1GSE7197Down-regulation of OsSRT1 induces DNA ´╗┐fragmentation and cell death in rice
10.598.1GSM159271Rice coleoptiles, 4 days old, anoxic, REPLICATE 1 (Sample #11)GSE6908Transcript Profiling of the Aerobic and Anoxic Rice Coleoptile
7.597.5GSM159185Y Leaf, biological rep 3GSE6893Expression data for reproductive development in rice
7.397.5GSM159205Inflorescence (P6, 22 - 30 cm), biological rep 2GSE6893Expression data for reproductive development in rice
7.197.4GSM159204Inflorescence (P6, 22 - 30 cm), biological rep 1GSE6893Expression data for reproductive development in rice
6.997.3GSM304397Control for the stable transgenic rice line (1)GSE12069Mycroarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion
6.297.1GSM159206Inflorescence (P6, 22 - 30 cm), biological rep 3GSE6893Expression data for reproductive development in rice
6.197.1GSM173093Rice OsSRT1 RNAi transgenic line LM2GSE7197Down-regulation of OsSRT1 induces DNA ´╗┐fragmentation and cell death in rice
6.097.0GSM159210Seed (S2, 3 - 4 dap), biological rep 1GSE6893Expression data for reproductive development in rice
6.097.0GSM159211Seed (S2, 3 - 4 dap), biological rep 2GSE6893Expression data for reproductive development in rice
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.022e+034Os04g0493400AB003194.1-Endochitinase A precursor (EC 3.2.1.14) (Seedchitinase A)4e-2At3g54420ATEP3C.G.S.X.
0.022e+034Os09g0508500AB114419.1-Hypothetical protein2e-4At2g28380DRB2 (DSRNA-BINDING PROTEIN 2)C.G.S.X.
0.024e+034Os03g0729700AK067533.1-Conserved hypothetical protein 46 family protein5e-1At3g02000ROXY1C.G.S.X.
0.014e-136Os05g0581800AK100204.1-Protein of unknown function DUF1296 family protein2e+0At1g07485unknown proteinC.G.S.X.
0.019e-136Os02g0224300AK099890.1-Hypothetical protein5e-4At2g25970KH domain-containing proteinC.G.S.X.
0.012e+034Os03g0130800AK058647.1-Bromodomain containing protein2e+0At5g11740AGP15 (ARABINOGALACTAN PROTEIN 15)C.G.S.X.
0.012e+034Os03g0848700AK065798.1-Nbs-lrr resistance protein (Fragment)1e-1At5g16700glycosyl hydrolase family 5 protein / cellulase family proteinC.G.S.X.
0.012e+034Os08g0450700AK099642.1-Hypothetical protein7e-20At4g332401-phosphatidylinositol-4-phosphate 5-kinase/ ATP binding / phosphatidylinositol phosphate kinase/ protein binding / zinc ion bindingC.G.S.X.
0.014e+034Os03g07690009631.m05457-Protein of unknown function DUF547 domaincontaining protein6e-2At2g23700unknown proteinC.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.311e-26121Arabidopsis thalianaAt3g45300823668IVD (ISOVALERYL-COA-DEHYDROGENASE)Encodes isovaleryl-coenzyme a dehydrogenase.---C.G.S.X.
0.472e-87323Glycine maxGma.16423.1.S1_atBG507821--2e-93At3g45300IVD (ISOVALERYL-COA-DEHYDROGENASE)C.G.S.X.
0.530876Hordeum vulgareContig4096_atContig4096--5e-70At3g45300IVD (ISOVALERYL-COA-DEHYDROGENASE)C.G.S.X.
0.474e-101369Populus trichocarpaPtpAffx.66341.1.S1_a_atCN550369hypothetical protein-3e-145At3g45300IVD (ISOVALERYL-COA-DEHYDROGENASE)C.G.S.X.
0.550745Triticum aestivumTa.27596.1.S1_atCA744201--5e-51At3g45300IVD (ISOVALERYL-COA-DEHYDROGENASE)C.G.S.X.
0.505e-63240Vitis vinifera1619387_atCF372302hypothetical protein LOC100265639-3e-76At3g45300IVD (ISOVALERYL-COA-DEHYDROGENASE)C.G.S.X.
0.520771Zea maysZm.8990.1.A1_atCF634396hypothetical protein LOC100217040-1e-33At3g45300IVD (ISOVALERYL-COA-DEHYDROGENASE)C.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
LGO:0022900A process whereby a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage