CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os05g0125500

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 87.2 Os05g0125500 CB660386 - Isovaleryl-CoA dehydrogenase, mitochondrialprecursor (EC 1.3.99.10) (IVD) 1e-26 At3g45300 IVD (ISOVALERYL-COA-DEHYDROGENASE) S.X. H.G.
0.44 58.1 Os08g0424200 AK060716.1 - Methylcrotonyl-CoA carboxylase beta chain,mitochondrial precursor (EC 6.4.1.4)(3-Methylcrotonyl-CoA carboxylase 2) (MCCase betasubunit) (3-methylcrotonyl-CoA:carbon dioxide ligase betasubunit) 2e-26 At4g34030 MCCB (3-METHYLCROTONYL-COA CARBOXYLASE) S.X. H.G.
0.43 55.4 Os12g0605800 AK121511.1 - Methylcrotonyl-CoA carboxylase alpha chain,mitochondrial precursor (EC 6.4.1.4)(3-Methylcrotonyl-CoA carboxylase 1) (MCCase alphasubunit) (3-methylcrotonyl-CoA:carbon dioxide ligasealpha subunit) 2e-15 At1g03090 MCCA S.X. H.G.
0.40 51.1 Os01g0110400 AK103194.1 - Acetoacetyl-coenzyme A thiolase (EC 2.3.1.9) 9e-10 At5g47720 acetyl-CoA C-acyltransferase, putative / 3-ketoacyl-CoA thiolase, putative S.X. H.G.
0.40 51.1 Os10g0516300 CB620164 - Electron transfer flavoprotein-ubiquinoneoxidoreductase, mitochondrial precursor (EC 1.5.5.1)(ETF-QO) (ETF-ubiquinone oxidoreductase) (ETFdehydrogenase) (Electron-transferring- flavoproteindehydrogenase). Splice isoform 2 8e-17 At2g43400 ETFQO (electron-transfer flavoprotein:ubiquinone oxidoreductase) S.X. H.G.
0.18 13.7 Os07g0170100 AK105761.1 - Branched-chain alpha-keto acid decarboxylase E1beta subunit (EC 1.2.4.4) 3e-55 At1g55510 BCDH BETA1 (BRANCHED-CHAIN ALPHA-KETO ACID DECARBOXYLASE E1 BETA SUBUNIT) S.X. H.G.
0.17 12.6 Os09g0440300 AK109168.1 - Aldehyde dehydrogenase family 7 member A1 (EC1.2.1.3) (Antiquitin 1) (Matured fruit 60 kDa protein)(MF-60) 1e+0 At2g01080 - S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
11.5 98.2 GSM173091 Rice OsSRT1 RNAi transgenic line LM1 GSE7197 Down-regulation of OsSRT1 induces DNA fragmentation and cell death in rice
10.5 98.1 GSM159271 Rice coleoptiles, 4 days old, anoxic, REPLICATE 1 (Sample #11) GSE6908 Transcript Profiling of the Aerobic and Anoxic Rice Coleoptile
7.5 97.5 GSM159185 Y Leaf, biological rep 3 GSE6893 Expression data for reproductive development in rice
7.3 97.5 GSM159205 Inflorescence (P6, 22 - 30 cm), biological rep 2 GSE6893 Expression data for reproductive development in rice
7.1 97.4 GSM159204 Inflorescence (P6, 22 - 30 cm), biological rep 1 GSE6893 Expression data for reproductive development in rice
6.9 97.3 GSM304397 Control for the stable transgenic rice line (1) GSE12069 Mycroarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion
6.2 97.1 GSM159206 Inflorescence (P6, 22 - 30 cm), biological rep 3 GSE6893 Expression data for reproductive development in rice
6.1 97.1 GSM173093 Rice OsSRT1 RNAi transgenic line LM2 GSE7197 Down-regulation of OsSRT1 induces DNA fragmentation and cell death in rice
6.0 97.0 GSM159210 Seed (S2, 3 - 4 dap), biological rep 1 GSE6893 Expression data for reproductive development in rice
6.0 97.0 GSM159211 Seed (S2, 3 - 4 dap), biological rep 2 GSE6893 Expression data for reproductive development in rice
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e+0 34 Os04g0493400 AB003194.1 - Endochitinase A precursor (EC 3.2.1.14) (Seedchitinase A) 4e-2 At3g54420 ATEP3 C.G. S.X.
0.02 2e+0 34 Os09g0508500 AB114419.1 - Hypothetical protein 2e-4 At2g28380 DRB2 (DSRNA-BINDING PROTEIN 2) C.G. S.X.
0.02 4e+0 34 Os03g0729700 AK067533.1 - Conserved hypothetical protein 46 family protein 5e-1 At3g02000 ROXY1 C.G. S.X.
0.01 4e-1 36 Os05g0581800 AK100204.1 - Protein of unknown function DUF1296 family protein 2e+0 At1g07485 unknown protein C.G. S.X.
0.01 9e-1 36 Os02g0224300 AK099890.1 - Hypothetical protein 5e-4 At2g25970 KH domain-containing protein C.G. S.X.
0.01 2e+0 34 Os03g0130800 AK058647.1 - Bromodomain containing protein 2e+0 At5g11740 AGP15 (ARABINOGALACTAN PROTEIN 15) C.G. S.X.
0.01 2e+0 34 Os03g0848700 AK065798.1 - Nbs-lrr resistance protein (Fragment) 1e-1 At5g16700 glycosyl hydrolase family 5 protein / cellulase family protein C.G. S.X.
0.01 2e+0 34 Os08g0450700 AK099642.1 - Hypothetical protein 7e-20 At4g33240 1-phosphatidylinositol-4-phosphate 5-kinase/ ATP binding / phosphatidylinositol phosphate kinase/ protein binding / zinc ion binding C.G. S.X.
0.01 4e+0 34 Os03g0769000 9631.m05457 - Protein of unknown function DUF547 domaincontaining protein 6e-2 At2g23700 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.31 1e-26 121 Arabidopsis thaliana At3g45300 823668 IVD (ISOVALERYL-COA-DEHYDROGENASE) Encodes isovaleryl-coenzyme a dehydrogenase. - - - C.G. S.X.
0.47 2e-87 323 Glycine max Gma.16423.1.S1_at BG507821 - - 2e-93 At3g45300 IVD (ISOVALERYL-COA-DEHYDROGENASE) C.G. S.X.
0.53 0 876 Hordeum vulgare Contig4096_at Contig4096 - - 5e-70 At3g45300 IVD (ISOVALERYL-COA-DEHYDROGENASE) C.G. S.X.
0.47 4e-101 369 Populus trichocarpa PtpAffx.66341.1.S1_a_at CN550369 hypothetical protein - 3e-145 At3g45300 IVD (ISOVALERYL-COA-DEHYDROGENASE) C.G. S.X.
0.55 0 745 Triticum aestivum Ta.27596.1.S1_at CA744201 - - 5e-51 At3g45300 IVD (ISOVALERYL-COA-DEHYDROGENASE) C.G. S.X.
0.50 5e-63 240 Vitis vinifera 1619387_at CF372302 hypothetical protein LOC100265639 - 3e-76 At3g45300 IVD (ISOVALERYL-COA-DEHYDROGENASE) C.G. S.X.
0.52 0 771 Zea mays Zm.8990.1.A1_at CF634396 hypothetical protein LOC100217040 - 1e-33 At3g45300 IVD (ISOVALERYL-COA-DEHYDROGENASE) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0022900 A process whereby a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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