Gene omics information

Query gene ID	Os05g0120700
Gene name
Organism	Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.63	82.7	Os05g0120700	AK062874.1	-	Cation transporting ATPase, C-terminal domaincontaining protein	2e-23	At1g07810	ECA1 (ER-TYPE CA2+-ATPASE 1)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.50	68.0	Os01g0734200	AK103747.1	-	RbohAOsp (Fragment)	2e-31	At1g64060	ATRBOH F (ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE PROTEIN F)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.38	46.9	Os08g0424500	AK071221.1	-	Betaine-aldehyde dehydrogenase (EC 1.2.1.8) (BADH)	2e-17	At1g74920	ALDH10A8	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.17	12.6	Os10g0422000	AK063303.1	-	Hypothetical protein	9e-4	At4g02710	kinase interacting family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.17	12.6	Os07g0295800	CB674667	-	Hypothetical protein	4e-1	At5g56980	unknown protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.05	2.5	Os06g0237300	AK102383.1	-	Zn-binding protein, LIM domain containing protein	2e-3	At2g23320	WRKY15	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
11.0	98.2	GSM262004	IAC165, 4 days after infection with S. hermonthica, biological replicate #1	GSE10373	Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
10.9	98.1	GSM262006	IAC165, 11 days after mock-infection, biological replicate #1	GSE10373	Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
10.1	98.0	GSM262019	Nipponbare, 11 days after mock-infection, biological replicate #2	GSE10373	Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
8.6	97.8	GSM262020	Nipponbare, 11 days after infection with S. hermonthica, biological replicate #1	GSE10373	Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
8.4	97.7	GSM262007	IAC165, 11 days after mock-infection, biological replicate #2	GSE10373	Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
7.9	97.6	GSM262002	IAC165, 4 days after mock-infection, biological replicate #1	GSE10373	Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
7.8	97.6	GSM262008	IAC165, 11 days after infection with S. hermonthica, biological replicate #1	GSE10373	Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
7.4	97.5	GSM262005	IAC165, 4 days after infection with S. hermonthica, biological replicate #2	GSE10373	Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
6.9	97.3	GSM262001	IAC165, 2 days after infection with S. hermonthica, biological replicate #2	GSE10373	Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
6.8	97.3	GSM159185	Y Leaf, biological rep 3	GSE6893	Expression data for reproductive development in rice

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.25	1e-47	192	Os03g0281600	AK070260.1	-	Ca2+-ATPase	1e-63	At1g07670	calcium-transporting ATPase	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.02	9e-2	40	Os03g0616400	AK071938.1	-	Plasma membrane Ca2+-ATPase	4e-26	At2g22950	calcium-transporting ATPase, plasma membrane-type, putative / Ca2+-ATPase, putative (ACA7)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	4e-4	48	Os03g0100800	AK068699.1	-	Plasma membrane H+-ATPase	2e-31	At5g62670	AHA11 (Arabidopsis H(+)-ATPase 11)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	2e-2	42	Os03g0224300	AK100541.1	-	Glycosyl transferase, family 20 domain containingprotein	7e-9	At1g68020	ATTPS6	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	4e-1	38	Os03g0643900	AK069402.1	-	Hypothetical protein	6e-1	At1g06540	unknown protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	4e-1	38	Os04g0605500	AK120057.1	-	Calcium-transporting ATPase 8, plasmamembrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 8)	3e-30	At3g21180	ACA9 (AUTOINHIBITED CA(2+)-ATPASE 9)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	1e+0	36	Os06g0170600	9640.m02691	-	BED finger domain containing protein	1e-1	At5g22570	WRKY38	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	1e+0	36	Os07g0466500	9635.m02748	-	Leucine-rich repeat, plant specific containingprotein	4e-1	At4g00590	asparaginase 2 family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.23	2e-23	111	Arabidopsis thaliana	At1g07810	837296	ECA1 (ER-TYPE CA2+-ATPASE 1)	Encodes an ER-type Ca2+-pumping ATPase.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.22	2e-11	71	Glycine max	Gma.10964.1.S1_at	AW277625	-	-	8e-13	At1g07810	ECA1 (ER-TYPE CA2+-ATPASE 1)	C.G.	S.X.	Please select
0.42	8e-138	490	Hordeum vulgare	Contig8949_at	Contig8949	-	-	4e-28	At1g07810	ECA1 (ER-TYPE CA2+-ATPASE 1)	C.G.	S.X.	Please select
0.26	6e-39	163	Populus trichocarpa	PtpAffx.204992.1.S1_at	pmrna9883	endoplasmic reticulum [ER]-type calcium ATPase	-	3e-116	At1g07810	ECA1 (ER-TYPE CA2+-ATPASE 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.42	4e-129	462	Triticum aestivum	TaAffx.7973.1.S1_at	CA606605	-	-	1e-14	At1g07810	ECA1 (ER-TYPE CA2+-ATPASE 1)	C.G.	S.X.	Please select
0.04	2e-1	36	Vitis vinifera	1620282_at	CB977969	hypothetical protein LOC100243325	-	5e+0	At5g13440	ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial, putative / Rieske iron-sulfur protein, putative	C.G.	S.X.	Please select
0.29	3e-72	272	Zea mays	Zm.509.1.S1_at	AF096871.1	calcium pump1	-	3e-11	At1g07810	ECA1 (ER-TYPE CA2+-ATPASE 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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