CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os05g0113300

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.53 71.3 Os05g0113300 AK106443.1 - Conserved hypothetical protein 4e-4 At3g53720 ATCHX20 (CATION/H+ EXCHANGER 20) S.X. H.G.
0.40 51.1 Os10g0117200 9638.m00184 - - 5e+0 At5g51451 unknown protein S.X. H.G.
0.35 41.7 Os06g0561100 CB622963 - - 8e-1 At3g44380 - S.X. H.G.
0.31 34.5 Os11g0644500 9639.m03915 - Transferase family protein 3e+0 At1g28450 AGL58 (AGAMOUS-LIKE 58) S.X. H.G.
0.27 27.5 Os01g0363600 NM_194015.1 - Hydroxyethylthiazole kinase, monofunctional familyprotein 7e+0 At5g02120 OHP (ONE HELIX PROTEIN) S.X. H.G.
0.05 2.5 Os02g0738300 AK108113.1 - Conserved hypothetical protein 1e-1 At4g14695 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
33.4 99.8 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
31.0 99.7 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
29.2 99.7 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
27.9 99.6 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
25.5 99.5 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
25.1 99.5 GSM377083 Genomic DNA - 45 day old leaf sample - mutant g6989 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
24.8 99.5 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
24.0 99.4 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
22.0 99.3 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
20.5 99.1 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.17 2e-29 133 Os05g0276100 AK069092.1 - Na+/H+ exchangeing protein-like 2e-5 At4g23700 ATCHX17 (CATION/H+ EXCHANGER 17) C.G. S.X.
0.12 8e-13 77 Os01g0817400 NM_191084.1 - Conserved hypothetical protein 6e+0 At5g37060 ATCHX24 C.G. S.X.
0.10 8e-16 87 Os05g0382200 9633.m02899 - Na+/H+ exchangeing protein-like 2e-1 At4g23700 ATCHX17 (CATION/H+ EXCHANGER 17) C.G. S.X.
0.09 3e-15 85 Os05g0485000 AK106318.1 - Conserved hypothetical protein 2e+0 At1g03600 photosystem II family protein C.G. S.X.
0.03 2e-10 69 Os09g0483700 9637.m02748 - - 2e+0 At5g04760 myb family transcription factor C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 4e-4 48 Arabidopsis thaliana At3g53720 824539 ATCHX20 (CATION/H+ EXCHANGER 20) member of Putative Na+/H+ antiporter family. Involved in the osmoregulation through K(+) fluxes and possibly pH modulation of an active endomembrane system in guard cells. - - - C.G. S.X.
0.02 1e-4 50 Glycine max GmaAffx.20763.1.S1_s_at AW100360 - - 3e+0 At2g33370 60S ribosomal protein L23 (RPL23B) C.G. S.X.
0.02 2e-4 48 Hordeum vulgare Contig10417_at Contig10417 - - 2e-16 At4g21860 MSRB2 (methionine sulfoxide reductase B 2) C.G. S.X.
0.04 1e-7 59 Populus trichocarpa PtpAffx.208448.1.S1_at pmrna16781 cation proton exchanger - 1e-12 At3g17630 ATCHX19 (CATION/H+ EXCHANGER 19) C.G. S.X.
0.02 1e-4 50 Triticum aestivum TaAffx.120308.1.S1_at BJ232529 - - 1e+0 At2g45530 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.01 1e-1 38 Vitis vinifera 1620486_at CF207301 hypothetical protein LOC100246026 - 4e+0 At2g35345 unknown protein C.G. S.X.
0.02 2e-4 48 Zea mays Zm.990.1.A1_at CF636054 - - 1e+1 At5g44345 F-box family protein-related C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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