CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os05g0108600

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.71 89.6 Os05g0108600 AK106508.1 - Cysteine proteinase 1e-11 At1g20850 XCP2 (xylem cysteine peptidase 2) S.X. H.G.
0.50 68.0 Os03g0401300 AK061713.1 - Sucrose synthase 2 (EC 2.4.1.13) (Sucrose-UDPglucosyltransferase 2) 6e-26 At5g20830 SUS1 (SUCROSE SYNTHASE 1) S.X. H.G.
0.50 68.0 Os01g0971400 AK105881.1 - Cysteine proteinase 1e-2 At1g20850 XCP2 (xylem cysteine peptidase 2) S.X. H.G.
0.44 58.1 Os07g0104100 AK107894.1 - Peroxidase 27 precursor (EC 1.11.1.7) (AtperoxP27) (PRXR7) (ATP12a) 5e-2 At1g44970 peroxidase, putative S.X. H.G.
0.19 15.1 Os02g0653000 AK062922.1 - Conserved hypothetical protein 1e+1 At5g27670 HTA7 (HISTONE H2A 7) S.X. H.G.
0.13 8.2 Os07g0645000 BI802078 - Allergen V5/Tpx-1 related family protein 3e-2 At5g19250 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
6.7 97.3 GSM67052 FL478 control replicate 1 GSE3053 Rice salt expression
6.0 97.0 GSM99858 TCHW P1_m103 control, biological rep1 GSE4438 Expression data from rice under salinity stress
5.3 96.7 GSM67060 IR29 salt stressed replicate 1 GSE3053 Rice salt expression
5.2 96.7 GSM67062 IR29 salt stressed replicate 3 GSE3053 Rice salt expression
5.2 96.7 GSM67053 FL478 control replicate 2 GSE3053 Rice salt expression
5.0 96.6 GSM99860 TCHW P3_m103 control, biological rep3 GSE4438 Expression data from rice under salinity stress
4.9 96.5 GSM149410 Rice Azucena 1ppm Arsenate Rep3 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
4.8 96.5 GSM261998 IAC165, 2 days after mock-infection, biological replicate #1 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
4.8 96.5 GSM67057 FL478 salt stressed replicate 3 GSE3053 Rice salt expression
4.7 96.4 GSM67056 FL478 salt stressed replicate 2 GSE3053 Rice salt expression
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.51 3e-88 327 Os01g0971400 AK105881.1 - Cysteine proteinase 1e-2 At1g20850 XCP2 (xylem cysteine peptidase 2) C.G. S.X.
0.15 7e-18 93 Os04g0670500 AK107506.1 - Cysteine proteinase GP-II (EC 3.4.22.-) 9e-1 At3g49340 cysteine proteinase, putative C.G. S.X.
0.14 7e-18 93 Os09g0565100 9637.m03345 - Peptidase C1A, papain family protein 4e-1 At3g49340 cysteine proteinase, putative C.G. S.X.
0.13 1e-25 119 Os09g0564400 9637.m03337 - - 2e+0 At5g65390 AGP7 C.G. S.X.
0.09 3e-14 81 Os11g0255300 AK071495.1 - Peptidase C1A, papain family protein 3e-3 At4g23520 cysteine proteinase, putative C.G. S.X.
0.09 1e-13 79 Os09g0562700 AK108733.1 - Pre-pro-TPE4A protein precursor 1e-1 At3g54940 - C.G. S.X.
0.07 3e-14 81 Os09g0564700 9637.m03340 - - 9e-3 At2g21430 cysteine proteinase A494, putative / thiol protease, putative C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.18 1e-11 71 Arabidopsis thaliana At1g20850 838677 XCP2 (xylem cysteine peptidase 2) F:peptidase activity, cysteine-type peptidase activity;P:proteolysis, developmental programmed cell death;C:cell wall;MOPVBAF - - - C.G. S.X.
0.05 4e-3 44 Glycine max PsAffx.CL729Contig1_at PsAffx.CL729Contig1 - - 2e+0 At2g05915 unknown protein C.G. S.X.
0.54 3e-91 335 Hordeum vulgare Contig6777_at Contig6777 - - 1e-2 At4g35350 XCP1 (XYLEM CYSTEINE PEPTIDASE 1) C.G. S.X.
0.07 1e+0 36 Populus trichocarpa PtpAffx.225753.1.S1_at pmrna45324 hypothetical protein - 4e-20 At4g35350 XCP1 (XYLEM CYSTEINE PEPTIDASE 1) C.G. S.X.
0.42 5e-76 286 Triticum aestivum Ta.14480.1.S1_x_at CD373564 - - 6e-5 At1g20850 XCP2 (xylem cysteine peptidase 2) C.G. S.X.
0.03 2e-1 36 Vitis vinifera 1620517_at CF414774 similar to cysteine protease 14 - 8e-17 At4g35350 XCP1 (XYLEM CYSTEINE PEPTIDASE 1) C.G. S.X.
0.50 1e-80 299 Zea mays Zm.14139.1.A1_at BG266248 xylem cysteine proteinase 2 - 8e-4 At1g20850 XCP2 (xylem cysteine peptidase 2) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006508 The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with the hydrolysis of peptide bonds.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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