Gene omics information

Query gene ID	Os05g0104800
Gene name
Organism	Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.64	83.4	Os05g0104800	AK070215.1	-	Eukaryotic translation initiation factor 3 subunit5 (eIF-3 epsilon) (eIF3 p32 subunit) (eIF3f)	6e-4	At2g39990	EIF2	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.69	87.9	Os04g0473400	AK067896.1	-	60S ribosomal protein L6	2e-6	At1g74050	60S ribosomal protein L6 (RPL6C)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.63	82.7	Os03g0341100	AK121580.1	-	60S ribosomal protein L18	2e-12	At5g27850	60S ribosomal protein L18 (RPL18C)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.62	81.5	Os01g0823300	D38011.1	-	Ribosomal protein S26	2e-12	At2g40590	40S ribosomal protein S26 (RPS26B)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.59	78.0	Os05g0350500	AK102897.1	-	Peptidase M24 family protein	2e-17	At3g51800	ATG2	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.57	77.0	Os01g0100700	AK121523.1	-	40S ribosomal protein S5-1	4e-26	At3g11940	ATRPS5A (RIBOSOMAL PROTEIN 5A)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.57	77.0	Os01g0721900	AK121001.1	-	Hyaluronan/mRNA binding protein family protein	3e-6	At4g16830	nuclear RNA-binding protein (RGGA)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.57	77.0	Os06g0562600	AK067114.1	-	T-complex protein 1, epsilon subunit(TCP-1-epsilon) (CCT-epsilon) (TCP-K36)	2e-88	At1g24510	T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putative	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.56	76.3	Os08g0207000	AK058705.1	-	40S ribosomal protein S11 (S18) (YS12) (RP41)	4e-60	At3g48930	EMB1080 (embryo defective 1080)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.52	69.6	Os02g0686400	AK119608.1	-	Aspartyl-tRNA synthetase (EC 6.1.1.12)(Aspartate--tRNA ligase) (AspRS)	1e-6	At4g31180	aspartyl-tRNA synthetase, putative / aspartate--tRNA ligase, putative	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
12.3	98.3	GSM275408	Bala root tip_At the wax layer_rep1	GSE10857	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
7.7	97.6	GSM275416	Azucena root tip_Before the wax layer_Rep3	GSE10857	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
6.7	97.3	GSM275410	Bala root tip_At the wax layer_rep3	GSE10857	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
6.7	97.3	GSM275414	Azucena root tip_Before the wax layer_rep1	GSE10857	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
6.4	97.2	GSM275409	Bala root tip_At the wax layer_rep2	GSE10857	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
6.0	97.0	GSM409431	9311_young panicle 2cm, biological rep2	GSE16265	SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
5.8	97.0	GSM409434	9311_young panicle 2cm, biological rep5	GSE16265	SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
5.6	96.9	GSM275407	Azucena root tip_At the wax layer_rep3	GSE10857	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
5.4	96.8	GSM275406	Azucena root tip_At the wax layer_rep2	GSE10857	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
5.2	96.7	GSM409430	9311_young panicle 2cm, biological rep1	GSE16265	SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e-1	38	Os08g0164500	9636.m00613	-	-	3e+0	At5g26140	lysine decarboxylase family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.02	7e-2	40	Os02g0767700	AK071237.1	-	Conserved hypothetical protein	6e-4	At1g44835	YbaK/prolyl-tRNA synthetase family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.02	3e-1	38	Os03g0577400	9631.m03649	-	-	3e-1	At5g01881	unknown protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.02	1e+0	36	Os01g0260300	9629.m01542	-	-	1e-1	At5g05230	ubiquitin-protein ligase	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.02	1e+0	36	Os02g0551600	AK063102.1	-	Conserved hypothetical protein	2e+0	At4g24026	unknown protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	3e-1	38	Os09g0422600	AK100679.1	-	Protein of unknown function DUF566 family protein	3e-1	At3g19570	unknown protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.14	6e-4	46	Arabidopsis thaliana	At2g39990	818587	EIF2	translation initiation factor eIF2 p47 subunit homolog	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.23	2e-13	77	Glycine max	GmaAffx.90454.1.A1_at	CF808712	-	-	5e-23	At2g39990	EIF2	C.G.	S.X.	Please select
0.54	3e-112	404	Hordeum vulgare	Contig5966_at	Contig5966	-	-	9e-2	At4g33360	terpene cyclase/mutase-related	C.G.	S.X.	Please select
0.17	9e-10	65	Populus trichocarpa	Ptp.2051.1.S1_at	CV243394	hypothetical protein	-	2e-16	At2g39990	EIF2	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.57	0	773	Triticum aestivum	Ta.30743.1.S1_at	CK169502	-	-	7e-1	At2g39990	EIF2	C.G.	S.X.	Please select
0.14	5e-11	67	Vitis vinifera	1617806_at	BQ797048	hypothetical protein LOC100249540	-	4e-10	At2g39990	EIF2	C.G.	S.X.	Please select
0.52	3e-81	301	Zea mays	Zm.5273.1.A1_at	BM497669	hypothetical protein LOC100272886	-	7e-1	At2g39990	EIF2	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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