Gene omics information

Query gene ID	Os04g0689500
Gene name
Organism	Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.79	93.6	Os04g0689500	AK060983.1	-	Conserved hypothetical protein	7e-1	At5g60615	-	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.86	96.4	Os05g0176100	AK067850.1	-	Cellulose synthase-1	3e-82	At4g32410	CESA1 (CELLULOSE SYNTHASE 1)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.82	95.0	Os05g0563600	AK099313.1	-	Beta-Ig-H3/fasciclin domain containing protein	6e-1	At5g09310	unknown protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.82	95.0	Os05g0386800	AK070472.1	-	-	2e-17	At5g60920	COB (COBRA)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.82	95.0	Os09g0494200	AK069564.1	-	Glycoside hydrolase, family 19 protein	4e-6	At3g16920	chitinase	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.74	91.4	Os05g0123100	AK120892.1	-	Glycosyl transferase, family 43 protein	6e-2	At1g66890	-	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.74	91.4	Os07g0462200	AK059964.1	-	Protein of unknown function DUF1218 family protein	3e-2	At1g13380	unknown protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.72	89.8	Os04g0650300	AK062726.1	-	-	5e+0	At1g63410	unknown protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.69	87.9	Os09g0533900	AK100449.1	-	Endo-beta-1,4-glucanase (EC 3.2.1.4) (Fragment)	2e-8	At1g75680	AtGH9B7 (Arabidopsis thaliana glycosyl hydrolase 9B7)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.67	87.2	Os03g0736300	AK070408.1	-	Endo-1,4-beta-glucanase (EC 3.2.1.4)	1e-9	At4g24260	ATGH9A3 (ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A3)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.0	97.0	GSM275415	Azucena root tip_Before the wax layer_Rep2	GSE10857	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
5.5	96.8	GSM375777	slr1 (k1001)_ shoot_replicate 3	GSE15046	Transcriptome analysis of gibberellin-signaling mutants in rice
5.3	96.7	GSM159172	Rice coleoptiles, 4 days old, aerobic, replicate N.1 (sample#9)	GSE6908	Transcript Profiling of the Aerobic and Anoxic Rice Coleoptile
5.1	96.6	GSM275413	Azucena root tip_Buckled at the wax layer_rep3	GSE10857	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
5.1	96.6	GSM375775	slr1 (k1001)_ shoot_replicate 2	GSE15046	Transcriptome analysis of gibberellin-signaling mutants in rice
4.9	96.5	GSM375773	slr1 (k1001)_ shoot_replicate 1	GSE15046	Transcriptome analysis of gibberellin-signaling mutants in rice
4.3	96.1	GSM159173	Rice coleoptiles, 4 days old, aerobic, replicate N.2 (sample#10)	GSE6908	Transcript Profiling of the Aerobic and Anoxic Rice Coleoptile
4.2	96.0	GSM304646	Unstable transgenic line (1)	GSE12069	Mycroarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion
4.0	95.9	GSM99870	TCHW P13_agami control, biological rep1	GSE4438	Expression data from rice under salinity stress
4.0	95.9	GSM99858	TCHW P1_m103 control, biological rep1	GSE4438	Expression data from rice under salinity stress

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.69	0	3808	Os04g0689400	AK102046.1	-	Protein kinase domain containing protein	2e-9	At1g49730	protein kinase family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.20	5e-31	137	Os04g0430600	AK106337.1	-	Harpin-induced 1 domain containing protein	4e-2	At5g42860	unknown protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.14	4e-13	77	Os06g0163300	AK058295.1	-	Harpin-induced 1 domain containing protein	8e-1	At5g58280	transcriptional factor B3 family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.06	6e-12	73	Os02g0667600	AK109748.1	-	Harpin-induced 1 domain containing protein	3e-2	At5g42860	unknown protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.02	6e-3	44	Os01g0123500	NM_184166.1	-	Ubiquitin ligase SINAT5 (EC 6.3.2.-) (Seven inabsentia homolog 5). Splice isoform 2	6e+0	At5g55650	unknown protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	7e-1	36	Arabidopsis thaliana	At5g60615	3771542	-	Encodes a defensin-like (DEFL) family protein.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.11	2e-1	38	Glycine max	GmaAffx.85311.1.S1_at	BI971353	-	-	4e-2	At5g42860	unknown protein	C.G.	S.X.	Please select
0.49	4e-121	434	Hordeum vulgare	Contig5737_at	Contig5737	-	-	2e-1	At2g36261	unknown protein	C.G.	S.X.	Please select
0.04	1e+0	36	Populus trichocarpa	PtpAffx.4593.1.S1_at	BI071984	hypothetical protein	-	1e-8	At1g45688	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.41	1e-94	347	Triticum aestivum	Ta.1942.1.S1_x_at	CD887139	-	-	2e-1	At2g14890	AGP9 (ARABINOGALACTAN PROTEIN 9)	C.G.	S.X.	Please select
0.06	3e-3	42	Vitis vinifera	1613399_at	CF208828	hypothetical protein LOC100254049	-	3e-3	At5g42860	unknown protein	C.G.	S.X.	Please select
0.46	5e-40	165	Zea mays	Zm.7579.1.A1_at	CO520294	hypothetical protein LOC100276241	-	3e+0	At4g29020	glycine-rich protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name
C	GO:0006468	The process of introducing a phosphate group on to a protein.
L	GO:0007165	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell.
L	GO:0007242	A series of reactions within the cell that occur as a result of a single trigger reaction or compound.

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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