Gene omics information

Query gene ID	Os04g0684300
Gene name
Organism	Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.9	Os04g0684300	AK105205.1	-	Hypothetical protein	2e+1	Atcg00560	-	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.61	81.2	Os04g0423800	AK108989.1	-	Peroxidase precursor (EC 1.11.1.7)	3e-3	At1g44970	peroxidase, putative	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.59	78.0	Os03g0245500	AK064707.1	-	Curculin-like (mannose-binding) lectin domaincontaining protein	1e+1	At5g53560	CB5-E (CYTOCHROME B5 ISOFORM E)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.55	73.7	Os07g0193000	9635.m00915	-	HIPL1 protein precursor	3e-1	At5g62630	HIPL2 (HIPL2 PROTEIN PRECURSOR)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.47	62.3	Os07g0421300	AK121014.1	-	Glycoside hydrolase, family 31 protein	7e-15	At3g23640	HGL1 (heteroglycan glucosidase 1)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.44	58.1	Os05g0276500	U30479.1	-	Expansin Os-EXPA3	5e-1	At2g39700	ATEXPA4 (ARABIDOPSIS THALIANA EXPANSIN A4)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
17.1	98.8	GSM359909	IR29 root, control, biological replicate 2	GSE14403	Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
16.0	98.7	GSM359904	FL478 root, control, biological replicate 3	GSE14403	Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
15.8	98.7	GSM359915	IR63731 root, control, biological replicate 3	GSE14403	Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
13.5	98.5	GSM359902	FL478 root, control, biological replicate 1	GSE14403	Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
12.4	98.3	GSM359908	IR29 root, control, biological replicate 1	GSE14403	Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
12.3	98.3	GSM359920	Pokkali root, control, biological replicate 2	GSE14403	Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
11.6	98.2	GSM359907	FL478 root, salt-treated, biological replicate 3	GSE14403	Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
10.3	98.1	GSM359906	FL478 root, salt-treated, biological replicate 2	GSE14403	Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
9.2	97.9	GSM359910	IR29 root, salt-treated, biological replicate 1	GSE14403	Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
9.2	97.9	GSM359903	FL478 root, control, biological replicate 2	GSE14403	Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.11	2e-3	44	Os02g0743900	9630.m05004	-	-	1e+0	At3g57670	NTT (NO TRANSMITTING TRACT)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.04	2e-3	44	Os03g0677250	9631.m04603	-	-	2e+0	At3g57500	unknown protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.04	2e-3	44	Os09g0487500	AK108131.1	-	Conserved hypothetical protein	5e-3	At3g57785	unknown protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.02	3e-2	40	Os08g0425100	AK069134.1	-	A dynamin-like protein ADL3	2e-12	At1g59610	ADL3 (ARABIDOPSIS DYNAMIN-LIKE 3)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	2e+1	30	Arabidopsis thaliana	Atcg00560	-	-	PSII L protein	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	4e-1	36	Glycine max	GmaAffx.2736.1.S1_at	BE057231	PHD2	-	2e-11	At5g26210	AL4 (ALFIN-LIKE 4)	C.G.	S.X.	Please select
0.10	9e-6	50	Hordeum vulgare	HVSMEf0001L20r2_at	HVSMEf0001L20r2	-	-	4e+0	At5g11820	-	C.G.	S.X.	Please select
0.03	6e+0	32	Populus trichocarpa	PtpAffx.94975.1.A1_at	CV264804	-	-	3e-1	At3g04400	emb2171 (embryo defective 2171)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	5e-6	52	Triticum aestivum	Ta.3847.1.S1_at	CK212269	-	-	2e-5	At3g57785	unknown protein	C.G.	S.X.	Please select
0.03	1e+0	32	Vitis vinifera	1621212_at	BQ794170	hypothetical protein LOC100260205	-	7e-5	At4g12790	ATP-binding family protein	C.G.	S.X.	Please select
0.10	3e-5	48	Zea mays	Zm.11372.1.A1_at	BM350048	-	-	1e+0	At1g14160	integral membrane family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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