CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os04g0678200

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.60 79.7 Os04g0678200 AK106193.1 - Protein of unknown function DUF1218 family protein 5e-1 At3g49601 - S.X. H.G.
0.40 51.1 Os05g0164800 AK103730.1 - Zinc transporter 6, chloroplast precursor(ZRT/IRT-like protein 6) 7e-1 At1g65420 unknown protein S.X. H.G.
0.40 51.1 Os05g0564800 AK120640.1 - Conserved hypothetical protein 1e-3 At1g17080 unknown protein S.X. H.G.
0.27 27.5 Os12g0636200 AK070465.1 - Homothorax 3e-11 At1g19700 BEL10 (BEL1-LIKE HOMEODOMAIN 10) S.X. H.G.
0.08 4.2 Os01g0754500 AK106976.1 - Protein of unknown function DUF1421 family protein 8e-2 At4g28300 hydroxyproline-rich glycoprotein family protein S.X. H.G.
0.08 4.2 Os10g0563000 AK072479.1 - Palmitoyl protein thioesterase family protein 1e-2 At3g60340 palmitoyl protein thioesterase family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
6.1 97.1 GSM359911 IR29 root, salt-treated, biological replicate 2 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
5.9 97.0 GSM149411 Rice Bala 0ppm Arsenate (Control) Rep3 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
5.2 96.7 GSM359917 IR63731 root, salt-treated, biological replicate 2 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
5.1 96.6 GSM149409 Rice Azucena 0ppm Arsenate (Control) Rep3 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
5.1 96.6 GSM359907 FL478 root, salt-treated, biological replicate 3 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
4.9 96.5 GSM100439 Rice Azucena 0ppm Arsenate (Control) Rep1 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
4.6 96.3 GSM100443 Rice Bala 0ppm Arsenate (Control) Rep1 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
4.3 96.1 GSM359909 IR29 root, control, biological replicate 2 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
4.1 96.0 GSM359902 FL478 root, control, biological replicate 1 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
4.0 95.9 GSM359906 FL478 root, salt-treated, biological replicate 2 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.30 4e-37 157 Os04g0678100 9632.m05681 - Protein of unknown function DUF1218 family protein 2e-1 At1g52910 unknown protein C.G. S.X.
0.15 3e-38 161 Os04g0678000 AK060170.1 - - 5e-1 At1g52910 unknown protein C.G. S.X.
0.06 7e-5 50 Os08g0261100 AK068711.1 - Protein of unknown function DUF1218 family protein 2e+0 At1g68220 unknown protein C.G. S.X.
0.02 4e-3 44 Os06g0590600 AK101025.1 - Beta-1,3-glucanase-like protein 1e-5 At5g64790 glycosyl hydrolase family 17 protein C.G. S.X.
0.02 4e-3 44 Os09g0323200 9637.m01274 - - 3e+0 Atmg01350 - C.G. S.X.
0.01 4e-3 44 Os12g0637700 AK070555.1 - Nodulin-like domain containing protein 1e-3 At2g39210 nodulin family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 5e-1 36 Arabidopsis thaliana At3g49601 6241216 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVA - - - C.G. S.X.
0.04 1e-5 52 Glycine max Gma.11997.1.S1_at BI971274 - - 5e-7 At1g61065 unknown protein C.G. S.X.
0.38 8e-63 240 Hordeum vulgare Contig7876_at Contig7876 - - 3e-2 At1g13380 unknown protein C.G. S.X.
0.02 7e-1 36 Populus trichocarpa PtpAffx.9376.2.A1_at CX180791 hypothetical protein - 2e-6 At1g68220 unknown protein C.G. S.X.
0.36 1e-38 161 Triticum aestivum TaAffx.85409.1.S1_at CA622936 - - 1e+0 At1g62790 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein C.G. S.X.
0.04 4e-2 38 Vitis vinifera 1613151_at BQ800267 hypothetical protein LOC100260721 - 1e-7 At4g27435 unknown protein C.G. S.X.
0.17 2e-7 56 Zea mays Zm.4144.1.S1_at AY104561.1 - - 5e-1 At1g62421 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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