CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os04g0675400

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.9 Os04g0675400 AK068186.1 - Heat shock protein DnaJ family protein 9e-1 At2g28710 zinc finger (C2H2 type) family protein S.X. H.G.
0.67 87.2 Os08g0425200 AK099569.1 - Conserved hypothetical protein 1e-1 At4g11870 unknown protein S.X. H.G.
0.61 81.2 Os02g0774100 9630.m05279 - Thioredoxin-related domain containing protein 4e-3 At5g06690 WCRKC1 (WCRKC THIOREDOXIN 1) S.X. H.G.
0.43 55.4 Os07g0489800 AK068191.1 - Ferredoxin domain containing protein 5e-1 At3g16250 NDF4 (NDH-DEPENDENT CYCLIC ELECTRON FLOW 1) S.X. H.G.
0.40 51.1 Os02g0773500 AK062694.1 - Conserved hypothetical protein 1e-3 At5g56950 NAP1 S.X. H.G.
0.36 44.0 Os01g0272800 NM_188072.1 - Conserved hypothetical protein 6e-1 At3g58710 WRKY69 S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
47.4 99.9 GSM207567 Mudanjiang8 wild type control rep3 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
34.2 99.8 GSM267998 Yellow leaves in F9Y RILs from parents lines GSE10872 Molecular characterization and genetic analysis reveal SA0420 as an early senescing rice mutant with pleotropic
33.4 99.8 GSM207566 Mudanjiang8 wild type control rep2 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
32.5 99.8 GSM207565 Mudanjiang8 wild type control rep1 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
20.3 99.1 GSM267999 Green leaves in F9G RILs from parents lines GSE10872 Molecular characterization and genetic analysis reveal SA0420 as an early senescing rice mutant with pleotropic
19.8 99.1 GSM207560 Mudanjiang8 OsWRKY13 Overexpressing D11UM1-1 rep3 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
19.6 99.1 GSM421698 XOO, 8 hai - rep4 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
19.0 99.0 GSM207563 Mudanjiang8 OsWRKY13 Overexpressing D11UM7-2 rep2 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
17.8 98.9 GSM207559 Mudanjiang8 OsWRKY13 Overexpressing D11UM1-1 rep2 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
17.6 98.9 GSM207564 Mudanjiang8 OsWRKY13 Overexpressing D11UM7-2 rep3 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.38 0 3202 Os04g0675200 AK121874.1 - Hypothetical protein 8e-3 At5g23110 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.09 0 1469 Os04g0675300 AK101752.1 - The start codon is not identified. 1e-1 At3g26510 octicosapeptide/Phox/Bem1p (PB1) domain-containing protein C.G. S.X.
0.02 2e-3 46 Os02g0198500 AK063694.1 - Conserved hypothetical protein 5e-3 At1g32290 unknown protein C.G. S.X.
0.02 7e-3 44 Os06g0725200 AK065261.1 - Lipolytic enzyme, G-D-S-L family protein 2e-1 At5g66370 unknown protein C.G. S.X.
0.01 7e-3 44 Os06g0131700 AK062952.1 - NAM protein 1e-12 At1g79580 SMB (SOMBRERO) C.G. S.X.
0.01 7e-3 44 Os06g0141000 9634.m00409 - Monosaccharide transporter 2e-1 At4g21480 carbohydrate transmembrane transporter/ sugar:hydrogen symporter C.G. S.X.
0.01 7e-3 44 Os08g0409900 9636.m03164 - Major facilitator superfamily protein 3e-6 At5g10190 transporter-related C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 9e-1 36 Arabidopsis thaliana At2g28710 817420 zinc finger (C2H2 type) family protein F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;PMO - - - C.G. S.X.
0.02 3e-1 38 Glycine max GmaAffx.67823.2.S1_at BG043066 - - 1e-3 At5g23240 DNAJ heat shock N-terminal domain-containing protein C.G. S.X.
0.02 7e-3 42 Hordeum vulgare Contig7254_s_at Contig7254 - - 6e+0 At2g17880 DNAJ heat shock protein, putative C.G. S.X.
0.02 3e-1 38 Populus trichocarpa PtpAffx.222560.1.S1_at pmrna40075 hypothetical protein - 2e+0 At5g02920 ubiquitin-protein ligase C.G. S.X.
0.20 5e-27 123 Triticum aestivum TaAffx.66656.1.S1_at BG907674 - - 3e+0 At4g30993 unknown protein C.G. S.X.
0.01 1e+0 34 Vitis vinifera 1618387_at CF215295 hypothetical protein LOC100249044 - 4e-25 At2g01970 endomembrane protein 70, putative C.G. S.X.
0.02 1e-1 38 Zea mays Zm.18264.1.A1_at CK347588 - - 1e+0 At4g16610 zinc finger (C2H2 type) family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006457 The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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