CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os04g0657300

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.9 Os04g0657300 CB624212 - Farnesyl pyrophosphate synthetase 2 (FPPsynthetase 2) (FPS 2) (Farnesyl diphosphate synthetase 2)[Includes: Dimethylallyltranstransferase (EC 2.5.1.1) 2e-1 At1g68552 CPuORF53 (Conserved peptide upstream open reading frame 53) S.X. H.G.
0.67 87.2 Os08g0432500 AK106170.1 - ATP-dependent Clp protease adaptor protein ClpSfamily protein 3e-2 At3g61678 unknown protein S.X. H.G.
0.67 87.2 Os03g0744700 AK071178.1 - Conserved hypothetical protein 4e-2 At1g62250 unknown protein S.X. H.G.
0.50 68.0 Os04g0657500 AK066638.1 - Lipase, class 3 family protein 1e+0 At3g17100 transcription factor S.X. H.G.
0.44 58.1 Os07g0656700 AU173917 - Protein of unknown function DUF1334 family protein 4e-11 At5g13720 - S.X. H.G.
0.43 55.4 Os03g0128800 AK066570.1 - Conserved hypothetical protein 7e-1 At1g23530 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
13.9 98.5 GSM174883 A mock 3 dpi rep 1 with array type rice from Affymetrix GSE7256 Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
13.2 98.4 GSM174885 B FR13 3 dpi rep 1 with array type rice from Affymetrix GSE7256 Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
12.6 98.4 GSM174888 C mock 3 dpi rep 2 with array type rice from Affymetrix GSE7256 Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
11.4 98.2 GSM421702 XOO, 24 hai - rep4 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
10.8 98.1 GSM421706 XOO, 96 hai - rep4 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
10.6 98.1 GSM421722 MOCK, 24 hai - rep4 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
10.3 98.1 GSM421686 XOC, 96 hai - rep4 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
10.3 98.1 GSM174887 D FR13 3 dpi rep 2 with array type rice from Affymetrix GSE7256 Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
9.9 98.0 GSM421726 MOCK, 96 hai - rep4 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
9.2 97.9 GSM421682 XOC, 24 hai - rep4 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.09 3e-20 101 Os04g0657100 AK072747.1 - Farnesyl diphosphate synthase (Fragment) 2e-1 At4g17190 FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) C.G. S.X.
0.09 2e-6 56 Os01g0695300 AK099451.1 - Farnesyl pyrophosphate synthetase (FPP synthetase)(FPS) (Farnesyl diphosphate synthetase) [Includes:Dimethylallyltranstransferase (EC 2.5.1.1) 1e-5 At5g47770 FPS1 (FARNESYL DIPHOSPHATE SYNTHASE 1) C.G. S.X.
0.06 1e-7 59 Os01g0703400 D85317.1 - Farnesyl pyrophosphate synthetase (FPP synthetase)(FPS) (Farnesyl diphosphate synthetase) [Includes:Dimethylallyltranstransferase (EC 2.5.1.1) 1e-24 At5g47770 FPS1 (FARNESYL DIPHOSPHATE SYNTHASE 1) C.G. S.X.
0.05 6e-3 44 Os05g0543400 AK100273.1 - Farnesyl diphosphate synthase (Fragment) 9e-16 At4g17190 FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) C.G. S.X.
0.01 4e-1 38 Os01g0238700 AK121040.1 - Oligopeptide transporter OPT superfamily protein 3e-1 At1g03022 unknown protein C.G. S.X.
0.01 2e+0 36 Os03g0773700 AK102670.1 - Receptor-like protein kinase 2 8e-9 At3g49670 BAM2 (BARELY ANY MERISTEM 2) C.G. S.X.
0.01 2e+0 36 Os04g0105000 AK120156.1 - Zn-finger, C-x8-C-x5-C-x3-H type domain containingprotein 2e-6 At2g28450 zinc finger (CCCH-type) family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e-1 38 Arabidopsis thaliana At1g68552 6240619 CPuORF53 (Conserved peptide upstream open reading frame 53) Upstream open reading frames (uORFs) are small open reading frames found in the 5' UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF53 represents a conserved upstream opening reading frame relative to major ORF AT1G68550.1 - - - C.G. S.X.
0.04 2e-5 52 Glycine max Gma.1844.1.S1_at CD396215 - - 2e-26 At4g17190 FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) C.G. S.X.
0.59 0 769 Hordeum vulgare Contig4941_s_at Contig4941 - - 3e-2 At4g17190 FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) C.G. S.X.
0.07 1e-6 56 Populus trichocarpa Ptp.4515.1.S1_s_at CV253179 hypothetical protein - 5e-79 At5g47770 FPS1 (FARNESYL DIPHOSPHATE SYNTHASE 1) C.G. S.X.
0.56 0 718 Triticum aestivum Ta.429.1.S1_at BQ172173 - - 2e-1 At5g47770 FPS1 (FARNESYL DIPHOSPHATE SYNTHASE 1) C.G. S.X.
0.02 2e-1 36 Vitis vinifera 1620969_at CB004272 - - 3e-1 At4g08151 unknown protein C.G. S.X.
0.10 2e-9 63 Zea mays Zm.317.1.S1_at AF330036.1 geranylgeranyl-diphosphate synthase - 3e-12 At4g17190 FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0008299 The chemical reactions and pathways resulting in the formation of any isoprenoid compound, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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