CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os04g0649700

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.9 Os04g0649700 AK059352.1 - Protein kinase domain containing protein 3e-1 At4g18692 unknown protein S.X. H.G.
0.73 91.1 Os03g0209500 AK121902.1 - Zn-finger, DHHC type domain containing protein 4e-13 At1g69420 zinc finger (DHHC type) family protein S.X. H.G.
0.55 73.7 Os07g0145400 AK103262.1 - Protein kinase domain containing protein 4e-14 At4g20940 leucine-rich repeat family protein S.X. H.G.
0.53 71.3 Os12g0273700 AK071152.1 - - 3e+0 At2g21660 CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2) S.X. H.G.
0.50 68.0 Os02g0816400 AK100544.1 - Conserved hypothetical protein 1e-1 At3g02150 PTF1 (PLASTID TRANSCRIPTION FACTOR 1) S.X. H.G.
0.33 38.8 Os10g0497600 AK103003.1 - Protein kinase domain containing protein 1e-25 At3g59110 protein kinase family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
15.6 98.7 GSM409431 9311_young panicle 2cm, biological rep2 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
15.6 98.7 GSM409430 9311_young panicle 2cm, biological rep1 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
14.0 98.5 GSM409433 9311_young panicle 2cm, biological rep4 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
13.0 98.4 GSM409432 9311_young panicle 2cm, biological rep3 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
12.1 98.3 GSM409434 9311_young panicle 2cm, biological rep5 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
11.5 98.2 GSM159187 SAM, biological rep 2 GSE6893 Expression data for reproductive development in rice
10.2 98.0 GSM159188 SAM, biological rep 3 GSE6893 Expression data for reproductive development in rice
9.6 97.9 GSM159186 SAM, biological rep 1 GSE6893 Expression data for reproductive development in rice
8.6 97.8 GSM409428 Nipponbare_young panicle 2cm, biological rep4 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
8.5 97.7 GSM409429 Nipponbare_young panicle 2cm, biological rep5 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.11 3e-52 208 Os02g0255400 NM_196472.1 - RNA-directed DNA polymerase (Reversetranscriptase) domain containing protein 1e-3 At2g39480 PGP6 (P-GLYCOPROTEIN 6) C.G. S.X.
0.05 1e-8 63 Os02g0830700 AK101172.1 - Leucine-rich repeat, plant specific containingprotein 1e-3 At1g10850 ATP binding / protein binding / protein kinase/ protein serine/threonine kinase C.G. S.X.
0.03 1e-11 73 Os01g0608000 D24997 - Protein kinase domain containing protein 2e-1 At3g08680 leucine-rich repeat transmembrane protein kinase, putative C.G. S.X.
0.03 4e-5 52 Os07g0574100 9635.m03848 - Protein kinase domain containing protein 2e-1 At5g07560 GRP20 (GLYCINE-RICH PROTEIN 20) C.G. S.X.
0.01 4e-5 52 Os12g0489300 AK071524.1 - Conserved hypothetical protein 2e-9 At1g29250 nucleic acid binding C.G. S.X.
0.01 7e-4 48 Os04g0463000 AK120857.1 - Protein kinase domain containing protein 3e-1 At1g48480 RKL1 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 3e-1 38 Arabidopsis thaliana At4g18692 6240656 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P - - - C.G. S.X.
0.01 5e-1 38 Glycine max HgAffx.16260.1.S1_at CD747816 - - 7e-2 At1g80240 unknown protein C.G. S.X.
0.03 3e-3 44 Hordeum vulgare HO09D01S_at HO09D01S - - 2e-1 Atmg00990 - C.G. S.X.
0.08 8e-9 63 Populus trichocarpa PtpAffx.45840.1.A1_s_at CK091852 hypothetical protein - 5e-22 At5g43020 leucine-rich repeat transmembrane protein kinase, putative C.G. S.X.
0.02 6e-3 44 Triticum aestivum TaAffx.82086.1.S1_at CA677722 - - 2e+1 At5g27170 unknown protein C.G. S.X.
0.02 4e-1 36 Vitis vinifera 1615153_at CD715305 - - 2e-8 At1g60630 leucine-rich repeat family protein C.G. S.X.
0.08 9e-34 145 Zea mays ZmAffx.1200.1.S1_at BE128804 hypothetical protein LOC100191370 - 4e+0 At5g11630 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006468 The process of introducing a phosphate group on to a protein.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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