CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os04g0648800

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.94 99.4 Os04g0648800 AK067751.1 - Conserved hypothetical protein 1e-6 At2g15530 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.47 62.3 Os01g0268800 AK105874.1 - Ubiquitin-associated domain containing protein 2e-4 At3g56740 ubiquitin-associated (UBA)/TS-N domain-containing protein S.X. H.G.
0.43 55.4 Os04g0398600 AK073335.1 - - 3e-32 At5g61840 GUT1 S.X. H.G.
0.41 52.4 Os09g0558000 AK111778.1 - Protein phosphatase type-2C 9e-10 At2g25070 protein phosphatase 2C, putative / PP2C, putative S.X. H.G.
0.38 46.9 Os03g0120300 AK066854.1 - THH1 5e-14 At1g14530 THH1 (TOM THREE HOMOLOG 1) S.X. H.G.
0.31 34.5 Os08g0562200 AK099629.1 - No apical meristem (NAM) protein domain containingprotein 2e-2 At5g04410 NAC2 S.X. H.G.
0.30 32.7 Os05g0511400 AK101120.1 - Protein kinase GhCLK1 (Fragment) 3e-41 At4g14350 protein kinase family protein S.X. H.G.
0.29 31.1 Os10g0545000 AK069472.1 - - 2e-1 At5g64560 magnesium transporter CorA-like family protein (MRS2-2) S.X. H.G.
0.29 31.1 Os06g0715400 AK073963.1 - Conserved hypothetical protein 1e-2 At5g66250 kinectin-related S.X. H.G.
0.29 31.1 Os02g0265700 AK100882.1 - Hypothetical protein 2e+0 At5g54840 SGP1 S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
10.7 98.1 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
7.0 97.4 GSM154937 Root_tZ-treatment_30min_replicate 2 GSE6719 Cytokinin responsive genes in rice
6.4 97.2 GSM154938 Root_tZ-treatment_30min_replicate 3 GSE6719 Cytokinin responsive genes in rice
5.6 96.9 GSM154833 Root_tZ-treatment_30min_replicate 1 GSE6719 Cytokinin responsive genes in rice
4.0 95.9 GSM149411 Rice Bala 0ppm Arsenate (Control) Rep3 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
3.9 95.8 GSM173089 Rice MH63 Control3 GSE7197 Down-regulation of OsSRT1 induces DNA fragmentation and cell death in rice
3.7 95.6 GSM173080 Rice MH63 Control2 GSE7197 Down-regulation of OsSRT1 induces DNA fragmentation and cell death in rice
3.2 94.9 GSM173091 Rice OsSRT1 RNAi transgenic line LM1 GSE7197 Down-regulation of OsSRT1 induces DNA fragmentation and cell death in rice
3.2 94.9 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
3.0 94.6 GSM100444 Rice Bala 0ppm Arsenate (Control) Rep2 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 2e-1 40 Os04g0185500 AK064939.1 - Zn-finger, RING domain containing protein 2e-12 At5g42940 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.01 7e-1 38 Os01g0195200 AK105501.1 - Serine/threonine-protein kinase PBS1 (EC 2.7.1.37)(AvrPphB susceptible protein 1) 3e-10 At2g20300 ALE2 (Abnormal Leaf Shape 2) C.G. S.X.
0.01 3e+0 36 Os02g0817000 AK099758.1 - Homeodomain-like containing protein 2e+0 At4g08875 - C.G. S.X.
0.00 7e-1 38 Os09g0281900 AK121112.1 - Hypothetical protein 1e-11 At3g04740 SWP (STRUWWELPETER) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 1e-6 56 Arabidopsis thaliana At2g15530 816045 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;MPOFBV - - - C.G. S.X.
0.03 5e-7 57 Glycine max GmaAffx.7280.1.S1_at AW459314 - - 8e-9 At4g34040 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.19 4e-67 256 Hordeum vulgare Contig9526_at Contig9526 - - 2e-6 At4g34040 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.04 5e-4 48 Populus trichocarpa PtpAffx.6691.1.S1_at CV267640 hypothetical protein - 1e-7 At2g15530 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.03 2e-2 42 Triticum aestivum Ta.2710.2.S1_at CA734795 - - 6e-1 At5g01530 chlorophyll A-B binding protein CP29 (LHCB4) C.G. S.X.
0.02 4e-4 46 Vitis vinifera 1619939_at CB971326 - - 2e+1 At5g43430 ETFBETA C.G. S.X.
0.23 2e-71 270 Zea mays Zm.16968.1.S1_at AY106536.1 zinc finger, C3HC4 type family protein - 2e-3 At4g34040 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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