CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os04g0644600

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.9 Os04g0644600 AK099966.1 - Epoxide hydrolase family protein 4e-21 At1g52510 hydrolase, alpha/beta fold family protein S.X. H.G.
0.71 89.6 Os08g0114100 AK099560.1 - Conserved hypothetical protein 4e-27 At1g64680 unknown protein S.X. H.G.
0.50 68.0 Os07g0171100 AK066475.1 - TPR-like domain containing protein 2e-16 At1g55480 binding / protein binding S.X. H.G.
0.47 62.3 Os04g0448600 AK068709.1 - ChaC-like protein family protein 2e-3 At1g44790 ChaC-like family protein S.X. H.G.
0.47 62.3 Os03g0704100 AK070474.1 - PAP fibrillin family protein 2e+0 At1g35410 - S.X. H.G.
0.39 48.3 Os01g0912700 AK068528.1 - Conserved hypothetical protein 1e-1 At2g01340 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
12.7 98.4 GSM174888 C mock 3 dpi rep 2 with array type rice from Affymetrix GSE7256 Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
11.1 98.2 GSM174890 G mock 4 dpi rep 2 with array type rice from Affymetrix GSE7256 Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
9.9 98.0 GSM421710 MOCK, 2 hai - rep4 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
9.8 98.0 GSM421694 XOO, 4 hai - rep4 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
9.1 97.9 GSM174885 B FR13 3 dpi rep 1 with array type rice from Affymetrix GSE7256 Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
8.8 97.8 GSM421674 XOC, 4 hai - rep4 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
8.6 97.8 GSM421726 MOCK, 96 hai - rep4 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
8.6 97.8 GSM421690 XOO, 2 hai - rep4 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
8.3 97.7 GSM421686 XOC, 96 hai - rep4 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
8.2 97.7 GSM421714 MOCK, 4 hai - rep4 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 3e-2 42 Os02g0133900 AK107180.1 - Eukaryotic protein of unknown function DUF829family protein 7e-1 At4g24240 WRKY7 C.G. S.X.
0.02 3e-2 42 Os03g0784100 9631.m05600 - Patatin family protein 3e-3 At4g29800 PLP8 (PATATIN-LIKE PROTEIN 8) C.G. S.X.
0.02 1e-1 40 Os12g0599000 9640.m03982 - - 3e-2 At3g14260 unknown protein C.G. S.X.
0.01 3e-2 42 Os02g0755400 AK106338.1 - RNA recognition motif-containing protein SEB-4 1e-4 At1g22910 RNA recognition motif (RRM)-containing protein C.G. S.X.
0.01 1e-1 40 Os04g0558900 AK100861.1 - Proteinase inhibitor I9, subtilisin propeptidedomain containing protein 6e-3 At5g59810 SBT5.4 C.G. S.X.
0.01 1e-1 40 Os12g0281801 9634.m00143 - - 6e-1 At2g05510 glycine-rich protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.21 4e-21 103 Arabidopsis thaliana At1g52510 841682 hydrolase, alpha/beta fold family protein F:hydrolase activity, catalytic activity;P:unknown;C:chloroplast, chloroplast envelope;BOPMFA - - - C.G. S.X.
0.17 2e-11 71 Glycine max Gma.4553.1.A1_at BU081133 - - 1e-48 At1g52510 hydrolase, alpha/beta fold family protein C.G. S.X.
0.30 3e-100 365 Hordeum vulgare Contig10144_s_at Contig10144 - - 1e-13 At1g52510 hydrolase, alpha/beta fold family protein C.G. S.X.
0.10 3e-10 67 Populus trichocarpa PtpAffx.112731.1.A1_at CV239317 - - 2e-18 At1g52510 hydrolase, alpha/beta fold family protein C.G. S.X.
0.04 5e-2 40 Triticum aestivum TaAffx.54376.1.S1_at CA682436 - - 4e+0 At4g26960 unknown protein C.G. S.X.
0.12 5e-30 131 Vitis vinifera 1616407_at CD715829 hypothetical protein LOC100250971 - 7e-9 At1g52510 hydrolase, alpha/beta fold family protein C.G. S.X.
0.02 1e-3 44 Zea mays ZmAffx.799.1.A1_at AI770347 - - 5e-2 At1g75080 BZR1 (BRASSINAZOLE-RESISTANT 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006725 The chemical reactions and pathways involving aromatic compounds, any organic compound characterized by one or more planar rings, each of which contains conjugated double bonds and delocalized pi electrons, as carried out by individual cells.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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